Wall clock time and date at job start Mon Mar 30 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 120.00191 * 2 1 4 4 H 1.48507 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47044 * 299.99851 * 3 2 1 6 6 H 1.48497 * 109.47127 * 60.00414 * 3 2 1 7 7 C 1.40051 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99816 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00523 * 359.97438 * 9 7 2 11 11 N 1.34785 * 119.99784 * 179.97438 * 9 7 2 12 12 C 1.46505 * 119.99514 * 179.97438 * 11 9 7 13 13 C 1.53008 * 109.46580 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.46835 * 179.97438 * 13 12 11 15 15 F 1.39901 * 112.90952 * 311.25060 * 14 13 12 16 16 C 1.53784 * 113.61233 * 179.97438 * 14 13 12 17 17 C 1.53787 * 87.07923 * 220.01769 * 16 14 13 18 18 C 1.53779 * 113.61529 * 82.50384 * 14 13 12 19 19 H 0.96998 * 119.99844 * 359.97438 * 1 2 3 20 20 H 0.96997 * 119.99851 * 0.02562 * 11 9 7 21 21 H 1.09000 * 109.47054 * 60.00432 * 12 11 9 22 22 H 1.08997 * 109.47397 * 299.99505 * 12 11 9 23 23 H 1.08997 * 109.47160 * 59.99921 * 13 12 11 24 24 H 1.08997 * 109.46852 * 299.99839 * 13 12 11 25 25 H 1.09004 * 113.61451 * 105.47254 * 16 14 13 26 26 H 1.08994 * 113.61477 * 334.56556 * 16 14 13 27 27 H 1.08997 * 113.61028 * 139.98291 * 17 16 14 28 28 H 1.09000 * 113.61529 * 270.88430 * 17 16 14 29 29 H 1.09006 * 113.61307 * 25.43275 * 18 14 13 30 30 H 1.08999 * 113.69146 * 254.53761 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8821 2.3963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0582 -2.4805 -0.0017 11 7 1.9489 -3.6478 -0.0027 12 6 1.2163 -4.9165 -0.0033 13 6 2.2106 -6.0795 -0.0051 14 6 1.4455 -7.4044 -0.0050 15 9 0.4385 -7.4517 0.9649 16 6 2.3578 -8.6424 -0.0074 17 6 1.3629 -9.2763 -0.9941 18 6 0.9767 -7.8451 -1.4018 19 1 -0.4850 0.8400 0.0004 20 1 2.9189 -3.6478 -0.0023 21 1 0.5893 -4.9736 -0.8931 22 1 0.5900 -4.9748 0.8869 23 1 2.8379 -6.0225 0.8844 24 1 2.8365 -6.0209 -0.8955 25 1 2.4037 -9.1528 0.9546 26 1 3.3422 -8.4586 -0.4377 27 1 1.8412 -9.8435 -1.7925 28 1 0.5559 -9.8250 -0.5084 29 1 1.5839 -7.4434 -2.2130 30 1 -0.0924 -7.7119 -1.5672 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308420740.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:10 Heat of formation + Delta-G solvation = -81.957902 kcal Electronic energy + Delta-G solvation = -14205.710261 eV Core-core repulsion = 11529.519834 eV Total energy + Delta-G solvation = -2676.190427 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.55325 -38.22701 -37.14505 -33.81944 -32.33504 -30.09957 -26.48630 -25.96097 -24.27206 -21.52236 -19.78102 -19.43503 -17.19824 -15.98703 -15.84016 -15.24347 -15.13361 -14.28574 -14.18483 -14.05360 -13.54084 -12.89032 -12.68537 -12.31561 -12.10981 -11.55719 -11.21593 -11.15006 -11.09201 -11.05115 -10.67653 -10.47080 -10.20142 -10.09030 -10.01469 -8.83214 -7.57354 -7.45838 -6.15485 -4.61059 3.14825 3.22607 3.27223 4.10457 4.18783 4.23744 4.50823 4.60826 4.62888 4.64917 5.11006 5.41698 5.50150 5.52386 5.60231 5.62525 5.71461 5.82198 5.88176 5.93727 6.03138 6.36574 6.60672 6.66641 7.46220 7.96622 8.13367 8.36172 9.05421 9.57821 10.63787 10.82596 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.077242 B = 0.005588 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.408725 B = 5009.648882 C = 5153.150440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.553 3.447 10 O -0.580 6.580 11 N -0.769 5.769 12 C 0.134 3.866 13 C -0.138 4.138 14 C 0.098 3.902 15 F -0.189 7.189 16 C -0.155 4.155 17 C -0.142 4.142 18 C -0.156 4.156 19 H 0.267 0.733 20 H 0.379 0.621 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.410 -13.966 -1.855 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.463 6.463 11 N -0.425 5.425 12 C 0.008 3.992 13 C -0.176 4.176 14 C 0.079 3.921 15 F -0.170 7.170 16 C -0.193 4.193 17 C -0.179 4.179 18 C -0.194 4.194 19 H 0.078 0.922 20 H 0.210 0.790 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.282 -13.863 -1.828 14.948 hybrid contribution 0.824 0.769 0.106 1.132 sum 6.106 -13.094 -1.722 14.550 Atomic orbital electron populations 1.70039 1.07078 1.27112 1.35532 1.25718 0.94607 1.00301 0.92635 0.86319 0.80453 0.81777 0.78194 1.18799 1.20180 1.20167 1.20927 0.93586 0.89416 1.54395 0.91393 1.18248 0.87243 0.82485 0.76351 1.90600 1.14126 1.86878 1.54705 1.46129 1.08448 1.04964 1.82912 1.20773 0.93824 0.83424 1.01149 1.22210 0.98851 0.93021 1.03531 1.21765 0.86996 0.95797 0.87565 1.92842 1.62074 1.97404 1.64635 1.23558 0.98753 0.96022 1.00982 1.22850 0.99265 0.96565 0.99229 1.23569 1.03252 0.96185 0.96394 0.92181 0.78967 0.93321 0.92926 0.90629 0.89836 0.90430 0.88409 0.90825 0.89844 0.88308 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.58 11.83 55.55 0.66 -22.92 16 2 C 0.09 2.47 5.50 -17.36 -0.10 2.38 16 3 Si 0.91 20.38 29.56 -169.99 -5.02 15.36 16 4 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.55 -15.76 9.54 -35.63 -0.34 -16.10 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 9 C 0.55 16.28 7.75 -12.98 -0.10 16.18 16 10 O -0.58 -19.53 15.02 5.20 0.08 -19.45 16 11 N -0.77 -17.75 5.55 -61.71 -0.34 -18.09 16 12 C 0.13 2.69 5.47 -4.03 -0.02 2.67 16 13 C -0.14 -1.98 5.05 -26.73 -0.14 -2.11 16 14 C 0.10 1.29 1.62 -89.81 -0.15 1.14 16 15 F -0.19 -3.08 16.54 2.25 0.04 -3.04 16 16 C -0.16 -1.55 7.54 -25.91 -0.20 -1.74 16 17 C -0.14 -1.34 8.06 -25.94 -0.21 -1.55 16 18 C -0.16 -1.78 7.52 -25.94 -0.20 -1.98 16 19 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 20 H 0.38 7.52 8.45 -40.82 -0.35 7.17 16 21 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.05 1.18 7.74 -51.93 -0.40 0.78 16 23 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.01 7.96 -51.93 -0.41 0.60 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 263.05 15.07 3.96 3.96 Total: -1.00 -35.16 263.05 -6.14 -41.30 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.08 Total: 3.99 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.44 Total: -1.11 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.31 Total: -41.01 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.08 Total: -19.45 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.16 -6.14 -41.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308420740.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.658 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds