Wall clock time and date at job start Mon Mar 30 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 120.00191 * 2 1 4 4 H 1.48507 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47044 * 299.99851 * 3 2 1 6 6 H 1.48497 * 109.47127 * 60.00414 * 3 2 1 7 7 C 1.40051 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99816 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00523 * 359.97438 * 9 7 2 11 11 N 1.34785 * 119.99784 * 179.97438 * 9 7 2 12 12 C 1.46505 * 119.99514 * 179.97438 * 11 9 7 13 13 C 1.53008 * 109.46580 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.46835 * 179.97438 * 13 12 11 15 15 F 1.39901 * 112.90952 * 311.25060 * 14 13 12 16 16 C 1.53784 * 113.61233 * 179.97438 * 14 13 12 17 17 C 1.53787 * 87.07923 * 220.01769 * 16 14 13 18 18 C 1.53779 * 113.61529 * 82.50384 * 14 13 12 19 19 H 0.96998 * 119.99844 * 359.97438 * 1 2 3 20 20 H 0.96997 * 119.99851 * 0.02562 * 11 9 7 21 21 H 1.09000 * 109.47054 * 60.00432 * 12 11 9 22 22 H 1.08997 * 109.47397 * 299.99505 * 12 11 9 23 23 H 1.08997 * 109.47160 * 59.99921 * 13 12 11 24 24 H 1.08997 * 109.46852 * 299.99839 * 13 12 11 25 25 H 1.09004 * 113.61451 * 105.47254 * 16 14 13 26 26 H 1.08994 * 113.61477 * 334.56556 * 16 14 13 27 27 H 1.08997 * 113.61028 * 139.98291 * 17 16 14 28 28 H 1.09000 * 113.61529 * 270.88430 * 17 16 14 29 29 H 1.09006 * 113.61307 * 25.43275 * 18 14 13 30 30 H 1.08999 * 113.69146 * 254.53761 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8821 2.3963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0582 -2.4805 -0.0017 11 7 1.9489 -3.6478 -0.0027 12 6 1.2163 -4.9165 -0.0033 13 6 2.2106 -6.0795 -0.0051 14 6 1.4455 -7.4044 -0.0050 15 9 0.4385 -7.4517 0.9649 16 6 2.3578 -8.6424 -0.0074 17 6 1.3629 -9.2763 -0.9941 18 6 0.9767 -7.8451 -1.4018 19 1 -0.4850 0.8400 0.0004 20 1 2.9189 -3.6478 -0.0023 21 1 0.5893 -4.9736 -0.8931 22 1 0.5900 -4.9748 0.8869 23 1 2.8379 -6.0225 0.8844 24 1 2.8365 -6.0209 -0.8955 25 1 2.4037 -9.1528 0.9546 26 1 3.3422 -8.4586 -0.4377 27 1 1.8412 -9.8435 -1.7925 28 1 0.5559 -9.8250 -0.5084 29 1 1.5839 -7.4434 -2.2130 30 1 -0.0924 -7.7119 -1.5672 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308420740.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:10 Heat of formation + Delta-G solvation = -107.290609 kcal Electronic energy + Delta-G solvation = -14206.808770 eV Core-core repulsion = 11529.519834 eV Total energy + Delta-G solvation = -2677.288936 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.71056 -39.58016 -38.87761 -35.68322 -34.53244 -31.72788 -28.50411 -26.84448 -25.67977 -22.81059 -21.77162 -20.49494 -19.24132 -17.53922 -17.05411 -16.83087 -16.42350 -15.89090 -15.78390 -15.64186 -14.86290 -14.36039 -14.29125 -13.81604 -13.38616 -13.08057 -12.89067 -12.80773 -12.64398 -12.40869 -12.12234 -11.96994 -11.83191 -11.11109 -11.07404 -10.95749 -9.89301 -9.53013 -8.30484 -6.87811 1.40642 1.41134 1.59614 2.24624 2.45579 2.98340 3.30836 3.34083 3.58467 3.63059 3.80946 3.83847 4.20411 4.25049 4.54897 4.73799 4.76065 4.77321 4.91216 5.00327 5.02920 5.07833 5.22158 5.31116 5.50662 5.85723 6.20965 6.24821 6.85060 7.54107 8.47394 8.66208 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.077242 B = 0.005588 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.408725 B = 5009.648882 C = 5153.150440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.025 3.975 3 Si 1.003 2.997 4 H -0.244 1.244 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.532 3.468 10 O -0.636 6.636 11 N -0.754 5.754 12 C 0.136 3.864 13 C -0.123 4.123 14 C 0.073 3.927 15 F -0.214 7.214 16 C -0.139 4.139 17 C -0.133 4.133 18 C -0.161 4.161 19 H 0.275 0.725 20 H 0.398 0.602 21 H 0.030 0.970 22 H 0.019 0.981 23 H 0.086 0.914 24 H 0.112 0.888 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 -14.206 -2.411 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.167 1.167 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.609 4.609 8 H 0.110 0.890 9 C 0.336 3.664 10 O -0.524 6.524 11 N -0.409 5.409 12 C 0.011 3.989 13 C -0.161 4.161 14 C 0.054 3.946 15 F -0.194 7.194 16 C -0.177 4.177 17 C -0.170 4.170 18 C -0.199 4.199 19 H 0.085 0.915 20 H 0.232 0.768 21 H 0.049 0.951 22 H 0.038 0.962 23 H 0.105 0.895 24 H 0.131 0.869 25 H 0.099 0.901 26 H 0.142 0.858 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.193 -14.161 -2.383 16.533 hybrid contribution -0.100 0.795 0.278 0.849 sum 8.092 -13.366 -2.105 15.766 Atomic orbital electron populations 1.70215 1.09756 1.28972 1.36539 1.27068 0.95536 1.05231 0.91098 0.84900 0.79379 0.75009 0.78516 1.16672 1.19279 1.19414 1.21492 0.94885 0.89888 1.54631 0.89006 1.18755 0.86894 0.84614 0.76134 1.90552 1.16488 1.88069 1.57297 1.45783 1.09380 1.04566 1.81171 1.20807 0.94959 0.84422 0.98707 1.22156 0.97609 0.90844 1.05466 1.22225 0.87623 0.96602 0.88159 1.92793 1.63373 1.97521 1.65757 1.23557 0.99242 0.93345 1.01534 1.22823 0.99066 0.95425 0.99670 1.23666 1.02536 0.97903 0.95755 0.91540 0.76756 0.95121 0.96217 0.89514 0.86948 0.90068 0.85824 0.88274 0.90370 0.86744 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.88 11.83 21.84 0.26 -51.62 16 2 C 0.03 1.44 5.50 85.31 0.47 1.91 16 3 Si 1.00 41.27 29.56 68.60 2.03 43.29 16 4 H -0.24 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.57 -33.07 9.54 24.83 0.24 -32.83 16 8 H 0.09 4.68 7.85 -2.91 -0.02 4.66 16 9 C 0.53 32.13 7.75 86.36 0.67 32.80 16 10 O -0.64 -44.86 15.02 -4.30 -0.06 -44.93 16 11 N -0.75 -35.06 5.55 -467.38 -2.59 -37.65 16 12 C 0.14 5.62 5.47 86.38 0.47 6.10 16 13 C -0.12 -3.33 5.05 30.60 0.15 -3.18 16 14 C 0.07 1.83 1.62 -10.27 -0.02 1.82 16 15 F -0.21 -7.10 16.54 44.97 0.74 -6.35 16 16 C -0.14 -2.34 7.54 31.12 0.23 -2.10 16 17 C -0.13 -2.17 8.06 31.11 0.25 -1.91 16 18 C -0.16 -3.46 7.52 31.11 0.23 -3.22 16 19 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 20 H 0.40 15.30 8.45 -92.71 -0.78 14.52 16 21 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.02 0.93 7.74 -2.39 -0.02 0.91 16 23 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.11 2.42 7.94 -2.39 -0.02 2.40 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.12 1.46 8.10 -2.39 -0.02 1.45 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 2.07 7.96 -2.38 -0.02 2.05 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -80.04 263.05 3.43 -76.61 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.35 Total: 21.28 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 2.70 Total: -0.63 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -2.34 Total: -89.28 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.06 Total: -44.93 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.74 Total: -6.35 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -80.04 3.43 -76.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308420740.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.682 kcal (2) G-P(sol) polarization free energy of solvation -80.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds