Wall clock time and date at job start Mon Mar 30 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.38530 * 2 1 4 4 S 1.83390 * 110.34510 * 237.77189 * 2 1 3 5 5 C 1.83986 * 95.85653 * 221.37742 * 4 2 1 6 6 C 1.55156 * 100.90694 * 35.34731 * 5 4 2 7 7 C 1.52936 * 108.96603 * 318.56549 * 6 5 4 8 8 H 1.09006 * 108.77579 * 269.38469 * 7 6 5 9 9 N 1.46897 * 108.89118 * 150.89314 * 7 6 5 10 10 C 1.46893 * 111.00104 * 82.02179 * 9 7 6 11 11 C 1.53004 * 109.47285 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 11 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 H 1.09005 * 109.47744 * 297.77049 * 1 2 3 21 21 H 1.09001 * 109.47635 * 57.77455 * 1 2 3 22 22 H 1.09003 * 109.47294 * 177.77593 * 1 2 3 23 23 H 1.08991 * 111.13418 * 153.25921 * 5 4 2 24 24 H 1.08995 * 111.13027 * 277.44474 * 5 4 2 25 25 H 1.08999 * 109.60714 * 198.62845 * 6 5 4 26 26 H 1.09005 * 109.60341 * 78.49698 * 6 5 4 27 27 H 1.00904 * 111.00030 * 318.06171 * 9 7 6 28 28 H 1.09000 * 109.47823 * 59.99694 * 10 9 7 29 29 H 1.09007 * 109.47029 * 299.99462 * 10 9 7 30 30 H 1.09000 * 109.47211 * 59.98987 * 11 10 9 31 31 H 1.09007 * 109.46376 * 299.99529 * 11 10 9 32 32 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9096 1.0217 0.0000 4 16 2.1675 -0.9170 -1.4546 5 6 3.5205 -1.7797 -0.5544 6 6 2.8495 -2.0200 0.8238 7 6 2.0643 -0.7686 1.2193 8 1 2.7178 -0.1108 1.7923 9 7 0.9308 -1.1659 2.0651 10 6 1.3543 -1.3525 3.4592 11 6 0.1496 -1.7654 4.3073 12 6 0.5842 -1.9575 5.7374 13 1 1.6165 -1.8011 6.0137 14 6 -0.3347 -2.3389 6.6918 15 7 0.0456 -2.5118 7.9389 16 14 -2.1201 -2.6099 6.2138 17 1 -2.3164 -4.0271 5.8161 18 1 -2.9958 -2.2947 7.3711 19 1 -2.4674 -1.7233 5.0743 20 1 -0.3635 0.4788 0.9093 21 1 -0.3634 0.5480 -0.8693 22 1 -0.3634 -1.0269 -0.0399 23 1 3.7748 -2.7230 -1.0374 24 1 4.3981 -1.1406 -0.4579 25 1 3.6149 -2.2233 1.5728 26 1 2.1718 -2.8711 0.7572 27 1 0.4871 -1.9985 1.7074 28 1 1.7657 -0.4186 3.8422 29 1 2.1155 -2.1313 3.5066 30 1 -0.2614 -2.6994 3.9242 31 1 -0.6119 -0.9869 4.2600 32 1 -0.6009 -2.7798 8.6105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379313495.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:06 Heat of formation + Delta-G solvation = -10.710948 kcal Electronic energy + Delta-G solvation = -12597.013167 eV Core-core repulsion = 10490.125416 eV Total energy + Delta-G solvation = -2106.887751 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.14539 -34.05898 -32.25592 -31.82411 -29.29912 -25.74123 -23.84951 -23.24965 -20.56119 -19.82006 -16.95486 -16.66214 -15.58988 -15.13404 -14.46184 -14.16209 -13.97401 -13.33726 -13.06316 -12.83764 -12.52188 -12.17285 -11.96452 -11.51359 -11.18701 -11.04433 -11.01584 -10.75933 -10.15051 -10.03673 -9.87842 -9.64182 -9.27199 -8.56922 -8.06081 -7.75188 -6.07619 -4.06479 1.81761 2.29528 3.29844 3.37749 3.42985 4.41847 4.43407 4.47226 4.72762 4.94500 5.02236 5.14345 5.27019 5.35108 5.48357 5.57492 5.78734 5.85803 5.98590 6.09741 6.14327 6.22830 6.49243 6.70054 7.05218 7.31403 7.51251 7.66005 7.82328 8.49000 8.95949 9.54612 11.05675 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.054544 B = 0.006321 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.222120 B = 4428.595295 C = 4717.762688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.021 4.021 3 H 0.093 0.907 4 S -0.317 6.317 5 C -0.063 4.063 6 C -0.153 4.153 7 C 0.080 3.920 8 H 0.085 0.915 9 N -0.680 5.680 10 C 0.071 3.929 11 C -0.009 4.009 12 C -0.523 4.523 13 H 0.070 0.930 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.263 1.263 20 H 0.085 0.915 21 H 0.045 0.955 22 H 0.062 0.938 23 H 0.102 0.898 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.339 0.661 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.009 0.991 31 H 0.026 0.974 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 2.673 -16.225 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.150 4.150 3 H 0.111 0.889 4 S -0.091 6.091 5 C -0.212 4.212 6 C -0.194 4.194 7 C -0.033 4.033 8 H 0.103 0.897 9 N -0.310 5.310 10 C -0.057 4.057 11 C -0.047 4.047 12 C -0.561 4.561 13 H 0.088 0.912 14 C -0.134 4.134 15 N -0.542 5.542 16 Si 0.709 3.291 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.187 1.187 20 H 0.103 0.897 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.120 0.880 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.158 0.842 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.380 3.253 -17.086 17.719 hybrid contribution 0.068 -1.063 1.035 1.485 sum 3.448 2.190 -16.051 16.562 Atomic orbital electron populations 1.21510 0.91127 1.02894 1.01836 1.23747 1.00457 0.99763 0.90999 0.88860 1.87804 1.40687 1.59352 1.21286 1.24185 0.97682 1.02510 0.96821 1.23181 1.00539 0.99833 0.95844 1.22082 0.92108 0.95078 0.94021 0.89706 1.60900 1.26191 1.40809 1.03116 1.22034 0.98527 0.99556 0.85559 1.19540 0.94071 0.96002 0.95096 1.21054 0.97397 1.46654 0.91002 0.91165 1.25008 0.98908 0.94680 0.94793 1.69915 1.34963 1.47758 1.01599 0.86749 0.85088 0.78922 0.78383 1.20402 1.21401 1.18739 0.89653 0.93624 0.91879 0.87993 0.89319 0.89991 0.90292 0.84171 0.91674 0.95902 0.97308 0.95613 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 8.25 37.15 0.31 -1.12 16 2 C -0.02 -0.25 3.92 -26.36 -0.10 -0.36 16 3 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 4 S -0.32 -3.96 22.66 -107.50 -2.44 -6.40 16 5 C -0.06 -0.65 7.52 38.30 0.29 -0.36 16 6 C -0.15 -1.77 5.56 -25.62 -0.14 -1.92 16 7 C 0.08 1.03 2.95 -67.37 -0.20 0.83 16 8 H 0.08 1.12 7.78 -51.93 -0.40 0.71 16 9 N -0.68 -10.47 4.32 -106.36 -0.46 -10.93 16 10 C 0.07 1.35 5.40 -3.83 -0.02 1.33 16 11 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 12 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 13 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 16 Si 0.88 21.66 27.46 -169.99 -4.67 16.99 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.26 -6.24 6.55 56.52 0.37 -5.87 16 20 H 0.08 1.14 7.66 -51.93 -0.40 0.74 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.81 7.52 -51.93 -0.39 0.42 16 23 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 0.96 7.56 -51.93 -0.39 0.56 16 27 H 0.34 5.11 7.58 -39.29 -0.30 4.81 16 28 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 29 H 0.02 0.43 7.87 -51.93 -0.41 0.02 16 30 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 31 H 0.03 0.62 7.21 -51.93 -0.37 0.24 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 268.00 15.07 4.04 4.04 Total: -1.00 -29.60 268.00 -8.35 -37.95 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.18 Total: 0.46 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -0.42 Total: -15.13 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.31 Total: -37.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -2.44 Total: -6.40 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.60 -8.35 -37.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379313495.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.238 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds