Wall clock time and date at job start Mon Mar 30 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.38530 * 2 1 4 4 S 1.83390 * 110.34510 * 237.77189 * 2 1 3 5 5 C 1.83986 * 95.85653 * 221.37742 * 4 2 1 6 6 C 1.55156 * 100.90694 * 35.34731 * 5 4 2 7 7 C 1.52936 * 108.96603 * 318.56549 * 6 5 4 8 8 H 1.09006 * 108.77579 * 269.38469 * 7 6 5 9 9 N 1.46897 * 108.89118 * 150.89314 * 7 6 5 10 10 C 1.46893 * 111.00104 * 82.02179 * 9 7 6 11 11 C 1.53004 * 109.47285 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 11 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 H 1.09005 * 109.47744 * 297.77049 * 1 2 3 21 21 H 1.09001 * 109.47635 * 57.77455 * 1 2 3 22 22 H 1.09003 * 109.47294 * 177.77593 * 1 2 3 23 23 H 1.08991 * 111.13418 * 153.25921 * 5 4 2 24 24 H 1.08995 * 111.13027 * 277.44474 * 5 4 2 25 25 H 1.08999 * 109.60714 * 198.62845 * 6 5 4 26 26 H 1.09005 * 109.60341 * 78.49698 * 6 5 4 27 27 H 1.00904 * 111.00030 * 318.06171 * 9 7 6 28 28 H 1.09000 * 109.47823 * 59.99694 * 10 9 7 29 29 H 1.09007 * 109.47029 * 299.99462 * 10 9 7 30 30 H 1.09000 * 109.47211 * 59.98987 * 11 10 9 31 31 H 1.09007 * 109.46376 * 299.99529 * 11 10 9 32 32 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9096 1.0217 0.0000 4 16 2.1675 -0.9170 -1.4546 5 6 3.5205 -1.7797 -0.5544 6 6 2.8495 -2.0200 0.8238 7 6 2.0643 -0.7686 1.2193 8 1 2.7178 -0.1108 1.7923 9 7 0.9308 -1.1659 2.0651 10 6 1.3543 -1.3525 3.4592 11 6 0.1496 -1.7654 4.3073 12 6 0.5842 -1.9575 5.7374 13 1 1.6165 -1.8011 6.0137 14 6 -0.3347 -2.3389 6.6918 15 7 0.0456 -2.5118 7.9389 16 14 -2.1201 -2.6099 6.2138 17 1 -2.3164 -4.0271 5.8161 18 1 -2.9958 -2.2947 7.3711 19 1 -2.4674 -1.7233 5.0743 20 1 -0.3635 0.4788 0.9093 21 1 -0.3634 0.5480 -0.8693 22 1 -0.3634 -1.0269 -0.0399 23 1 3.7748 -2.7230 -1.0374 24 1 4.3981 -1.1406 -0.4579 25 1 3.6149 -2.2233 1.5728 26 1 2.1718 -2.8711 0.7572 27 1 0.4871 -1.9985 1.7074 28 1 1.7657 -0.4186 3.8422 29 1 2.1155 -2.1313 3.5066 30 1 -0.2614 -2.6994 3.9242 31 1 -0.6119 -0.9869 4.2600 32 1 -0.6009 -2.7798 8.6105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379313495.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:06 Heat of formation + Delta-G solvation = -28.905848 kcal Electronic energy + Delta-G solvation = -12597.802158 eV Core-core repulsion = 10490.125416 eV Total energy + Delta-G solvation = -2107.676741 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.28891 -35.77489 -34.06721 -32.79198 -30.98783 -27.00961 -25.42739 -24.23751 -22.33202 -20.91197 -18.96994 -17.74878 -16.68532 -16.53643 -16.13454 -15.56176 -15.09089 -14.78617 -14.45229 -14.08529 -13.93316 -13.55576 -13.15167 -12.98401 -12.83164 -12.18989 -12.10732 -11.92654 -11.77651 -11.69220 -11.59423 -11.41902 -10.77305 -10.75595 -9.34026 -8.71693 -8.29904 -6.34374 0.89986 1.36984 1.37607 1.39654 1.52213 2.36814 3.06192 3.22183 3.52472 3.77086 3.98271 4.08499 4.19962 4.40985 4.46506 4.53256 4.59396 4.71089 4.88710 4.90406 4.97691 5.03734 5.16124 5.30705 5.48796 5.49927 5.64398 6.09943 6.24528 6.46340 6.74569 7.30856 8.86754 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.054544 B = 0.006321 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.222120 B = 4428.595295 C = 4717.762688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.015 4.015 3 H 0.101 0.899 4 S -0.344 6.344 5 C -0.050 4.050 6 C -0.151 4.151 7 C 0.080 3.920 8 H 0.083 0.917 9 N -0.676 5.676 10 C 0.087 3.913 11 C -0.004 4.004 12 C -0.533 4.533 13 H 0.032 0.968 14 C 0.005 3.995 15 N -0.952 5.952 16 Si 0.952 3.048 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.246 1.246 20 H 0.075 0.925 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.117 0.883 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.344 0.656 28 H 0.056 0.944 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.023 0.977 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 2.577 -18.047 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.144 4.144 3 H 0.119 0.881 4 S -0.118 6.118 5 C -0.199 4.199 6 C -0.191 4.191 7 C -0.032 4.032 8 H 0.102 0.898 9 N -0.307 5.307 10 C -0.042 4.042 11 C -0.042 4.042 12 C -0.571 4.571 13 H 0.050 0.950 14 C -0.192 4.192 15 N -0.592 5.592 16 Si 0.776 3.224 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.169 1.169 20 H 0.094 0.906 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.135 0.865 24 H 0.121 0.879 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.163 0.837 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.807 3.162 -18.939 19.406 hybrid contribution 0.355 -1.018 1.606 1.934 sum 3.162 2.144 -17.334 17.750 Atomic orbital electron populations 1.21445 0.91217 1.02537 1.01724 1.23694 1.00347 0.99991 0.90392 0.88063 1.87929 1.42045 1.59892 1.21941 1.24249 0.97040 1.03220 0.95355 1.23102 1.00467 0.98774 0.96775 1.22141 0.91384 0.95767 0.93874 0.89832 1.60786 1.27320 1.40972 1.01581 1.21666 0.96491 0.98871 0.87130 1.19431 0.95614 0.96286 0.92892 1.21423 0.95871 1.46044 0.93799 0.94950 1.25993 1.04138 0.94444 0.94579 1.70067 1.36834 1.49318 1.03024 0.85624 0.78716 0.79552 0.78532 1.19224 1.21155 1.16941 0.90600 0.92806 0.92401 0.86454 0.87866 0.89648 0.90694 0.83661 0.92506 0.96158 0.96433 0.95819 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 8.25 71.98 0.59 -1.94 16 2 C -0.02 -0.35 3.92 30.83 0.12 -0.23 16 3 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 4 S -0.34 -7.84 22.66 -56.49 -1.28 -9.12 16 5 C -0.05 -0.90 7.52 72.72 0.55 -0.35 16 6 C -0.15 -3.14 5.56 31.31 0.17 -2.97 16 7 C 0.08 1.92 2.95 45.14 0.13 2.06 16 8 H 0.08 2.05 7.78 -2.38 -0.02 2.03 16 9 N -0.68 -19.67 4.32 -490.43 -2.12 -21.79 16 10 C 0.09 3.23 5.40 86.31 0.47 3.70 16 11 C 0.00 -0.20 4.30 29.85 0.13 -0.07 16 12 C -0.53 -30.41 9.66 25.60 0.25 -30.16 16 13 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 14 C 0.01 0.31 5.47 84.65 0.46 0.77 16 15 N -0.95 -59.58 13.96 21.45 0.30 -59.29 16 16 Si 0.95 44.14 27.46 68.60 1.88 46.03 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 19 H -0.25 -10.64 6.55 99.48 0.65 -9.99 16 20 H 0.08 1.89 7.66 -2.38 -0.02 1.88 16 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 1.38 7.52 -2.39 -0.02 1.36 16 23 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.65 7.56 -2.38 -0.02 1.63 16 27 H 0.34 9.65 7.58 -89.69 -0.68 8.97 16 28 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 29 H 0.02 0.75 7.87 -2.38 -0.02 0.74 16 30 H 0.02 0.77 7.56 -2.39 -0.02 0.75 16 31 H 0.02 1.09 7.21 -2.38 -0.02 1.07 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -63.21 268.00 2.01 -61.20 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.35 Total: 12.15 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 2.87 Total: -29.19 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -1.82 Total: -81.07 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.28 Total: -9.12 kcal Total: -63.21 2.01 -61.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379313495.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.298 kcal (2) G-P(sol) polarization free energy of solvation -63.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds