Wall clock time and date at job start Mon Mar 30 2020 02:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 112.51826 * 2 1 4 4 S 1.81553 * 113.15006 * 230.13516 * 2 1 3 5 5 C 1.81424 * 73.13994 * 273.36139 * 4 2 1 6 6 C 1.53041 * 113.14883 * 129.79288 * 2 1 3 7 7 H 1.08998 * 113.15320 * 327.07592 * 6 2 1 8 8 N 1.46906 * 113.15230 * 197.61967 * 6 2 1 9 9 C 1.46901 * 110.99793 * 155.11971 * 8 6 2 10 10 C 1.53000 * 109.46769 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47116 * 59.99536 * 15 13 11 17 17 H 1.48500 * 109.46585 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46730 * 299.99515 * 15 13 11 19 19 H 1.08997 * 109.47747 * 290.20008 * 1 2 3 20 20 H 1.08999 * 109.47232 * 50.20408 * 1 2 3 21 21 H 1.09004 * 109.46966 * 170.20122 * 1 2 3 22 22 H 1.09000 * 109.46999 * 189.79781 * 3 2 1 23 23 H 1.09004 * 109.46920 * 309.79797 * 3 2 1 24 24 H 1.08997 * 109.47352 * 69.79341 * 3 2 1 25 25 H 1.09003 * 113.14477 * 216.14288 * 5 4 2 26 26 H 1.08990 * 113.14855 * 86.66471 * 5 4 2 27 27 H 1.00899 * 110.99995 * 279.07573 * 8 6 2 28 28 H 1.09001 * 109.46874 * 60.00179 * 9 8 6 29 29 H 1.08992 * 109.47407 * 300.00197 * 9 8 6 30 30 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 31 31 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 32 32 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1159 1.4134 0.0000 4 16 2.2437 -1.0700 -1.2813 5 6 1.9432 -2.1159 0.1703 6 6 2.1316 -0.9006 1.0812 7 1 1.5266 -0.9459 1.9867 8 7 3.5424 -0.6025 1.3621 9 6 3.9083 -1.0213 2.7218 10 6 5.3815 -0.6958 2.9765 11 6 5.7571 -1.1261 4.3711 12 1 5.0190 -1.5860 5.0114 13 6 7.0429 -0.9325 4.8294 14 7 7.9418 -0.3728 4.0494 15 14 7.5087 -1.4664 6.5579 16 1 7.2939 -2.9289 6.6989 17 1 8.9385 -1.1504 6.8051 18 1 6.6642 -0.7447 7.5433 19 1 -0.3634 0.3548 0.9644 20 1 -0.3633 0.6577 -0.7896 21 1 -0.3633 -1.0127 -0.1749 22 1 3.1906 1.3612 -0.1749 23 1 1.6474 2.0009 -0.7896 24 1 1.9272 1.8850 0.9644 25 1 2.7068 -2.8807 0.3128 26 1 0.9330 -2.5235 0.2030 27 1 4.1460 -1.0314 0.6768 28 1 3.7505 -2.0948 2.8261 29 1 3.2884 -0.4910 3.4446 30 1 6.0011 -1.2265 2.2536 31 1 5.5397 0.3776 2.8720 32 1 8.8464 -0.2362 4.3720 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393860408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:21 Heat of formation + Delta-G solvation = 7.240785 kcal Electronic energy + Delta-G solvation = -12563.421857 eV Core-core repulsion = 10457.312552 eV Total energy + Delta-G solvation = -2106.109306 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.52609 -34.49878 -32.58796 -30.41616 -28.50065 -26.98125 -24.09740 -22.52193 -20.81032 -20.00430 -16.45915 -15.78662 -15.15096 -15.03994 -14.64333 -14.37129 -13.80562 -13.09455 -12.95138 -12.50487 -12.34767 -12.16436 -11.97993 -11.42756 -11.19625 -11.09646 -10.93678 -10.61540 -10.45019 -10.03985 -9.70531 -9.37595 -9.18148 -8.36602 -7.93142 -7.64004 -6.00444 -4.03540 1.91755 2.03739 3.32775 3.37470 3.39373 4.22828 4.45546 4.60698 4.88032 5.01565 5.13724 5.34461 5.35749 5.45071 5.56322 5.66007 5.73869 5.91308 6.00925 6.07588 6.27204 6.34441 6.55820 6.92729 7.40015 7.70380 7.77488 7.90653 8.06147 8.41142 9.03485 9.60326 11.10873 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.059188 B = 0.005826 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.955644 B = 4805.283252 C = 4822.808305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.017 4.017 3 C -0.118 4.118 4 S -0.304 6.304 5 C -0.115 4.115 6 C 0.094 3.906 7 H 0.100 0.900 8 N -0.661 5.661 9 C 0.065 3.935 10 C 0.026 3.974 11 C -0.523 4.523 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.349 0.651 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.014 0.986 31 H 0.026 0.974 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.870 -0.471 -6.864 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.127 4.127 3 C -0.177 4.177 4 S -0.078 6.078 5 C -0.265 4.265 6 C -0.020 4.020 7 H 0.118 0.882 8 N -0.292 5.292 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.562 4.562 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 H 0.088 0.912 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.170 0.830 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.242 0.210 -8.052 15.500 hybrid contribution -0.057 -1.360 1.741 2.210 sum -13.300 -1.150 -6.311 14.766 Atomic orbital electron populations 1.21858 0.91708 1.02550 1.02626 1.23862 0.97350 0.99525 0.91986 1.21594 1.02418 0.92092 1.01553 1.88876 1.82262 1.12109 1.24529 1.25165 1.05307 1.02068 0.93997 1.22446 0.93464 0.89115 0.96959 0.88248 1.60407 0.99856 1.62921 1.06012 1.22248 1.00818 0.96471 0.86711 1.19060 0.87999 0.97855 0.96276 1.21118 0.95782 1.40186 0.99137 0.92803 1.24999 0.96581 0.95233 0.97484 1.69961 1.03662 1.43345 1.36180 0.86647 0.77411 0.79040 0.84823 1.20310 1.21259 1.20216 0.91178 0.91691 0.91942 0.90163 0.93532 0.91318 0.88841 0.88089 0.83012 0.96434 0.92133 0.96755 0.95538 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.99 37.16 0.33 -0.93 16 2 C -0.02 -0.21 1.32 -90.60 -0.12 -0.33 16 3 C -0.12 -1.56 8.65 37.16 0.32 -1.23 16 4 S -0.30 -4.35 23.25 -107.50 -2.50 -6.85 16 5 C -0.11 -1.44 7.14 37.18 0.27 -1.18 16 6 C 0.09 1.29 3.42 -67.67 -0.23 1.06 16 7 H 0.10 1.28 7.84 -51.93 -0.41 0.87 16 8 N -0.66 -11.32 5.38 -117.81 -0.63 -11.96 16 9 C 0.07 1.31 5.47 -3.82 -0.02 1.29 16 10 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 11 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.58 6.83 -51.93 -0.35 0.22 16 22 H 0.08 1.22 7.64 -51.93 -0.40 0.83 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.10 1.05 7.12 -51.93 -0.37 0.68 16 27 H 0.35 6.20 7.85 -39.29 -0.31 5.89 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 274.16 15.07 4.13 4.13 Total: -1.00 -29.38 274.16 -8.48 -37.86 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.18 Total: 0.62 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.01 Total: -14.20 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.10 Total: -38.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -2.50 Total: -6.85 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.38 -8.48 -37.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393860408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.102 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds