Wall clock time and date at job start Mon Mar 30 2020 02:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 112.49360 * 2 1 4 4 S 1.81426 * 113.14876 * 230.17760 * 2 1 3 5 5 C 1.81425 * 73.13846 * 216.13412 * 4 2 1 6 6 C 1.53040 * 113.15333 * 129.77829 * 2 1 3 7 7 H 1.09004 * 113.15233 * 263.44974 * 6 2 1 8 8 N 1.46901 * 113.14901 * 32.89898 * 6 2 1 9 9 C 1.46905 * 110.99870 * 205.00184 * 8 6 2 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47393 * 180.02562 * 10 9 8 12 12 H 1.08010 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00736 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99548 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00627 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47294 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47394 * 119.99957 * 15 13 11 18 18 H 1.48499 * 109.47384 * 240.00136 * 15 13 11 19 19 H 1.09004 * 109.46939 * 290.21945 * 1 2 3 20 20 H 1.08998 * 109.47835 * 50.22344 * 1 2 3 21 21 H 1.09003 * 109.47411 * 170.22346 * 1 2 3 22 22 H 1.08997 * 109.47058 * 189.77937 * 3 2 1 23 23 H 1.09004 * 109.47341 * 309.78010 * 3 2 1 24 24 H 1.08996 * 109.46855 * 69.77664 * 3 2 1 25 25 H 1.08994 * 113.15066 * 273.34121 * 5 4 2 26 26 H 1.09004 * 113.14469 * 143.85555 * 5 4 2 27 27 H 1.00901 * 111.00067 * 328.95360 * 8 6 2 28 28 H 1.09001 * 109.46798 * 300.00327 * 9 8 6 29 29 H 1.08998 * 109.46961 * 60.00043 * 9 8 6 30 30 H 1.09001 * 109.47393 * 299.99719 * 10 9 8 31 31 H 1.08998 * 109.47408 * 60.00073 * 10 9 8 32 32 H 0.97002 * 119.99722 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1153 1.4136 0.0000 4 16 2.2432 -1.0683 -1.2812 5 6 3.3257 -1.1918 0.1695 6 6 2.1317 -0.9003 1.0814 7 1 2.4053 -0.3585 1.9868 8 7 1.3160 -2.0892 1.3628 9 6 1.5608 -2.5856 2.7236 10 6 0.6961 -3.8216 2.9788 11 6 0.9467 -4.3305 4.3750 12 1 1.6526 -3.8232 5.0160 13 6 0.2750 -5.4436 4.8341 14 7 -0.5850 -6.0610 4.0536 15 14 0.5862 -6.0747 6.5644 16 1 1.5905 -5.2096 7.2338 17 1 -0.6821 -6.0485 7.3365 18 1 1.0970 -7.4675 6.4989 19 1 -0.3633 0.3552 0.9644 20 1 -0.3635 0.6575 -0.7898 21 1 -0.3634 -1.0128 -0.1745 22 1 3.1900 1.3618 -0.1745 23 1 1.6468 2.0009 -0.7898 24 1 1.9261 1.8852 0.9643 25 1 4.0892 -0.4146 0.2017 26 1 3.7396 -2.1901 0.3115 27 1 0.3359 -1.8977 1.2187 28 1 2.6128 -2.8502 2.8300 29 1 1.3068 -1.8088 3.4448 30 1 -0.3560 -3.5573 2.8723 31 1 0.9504 -4.5983 2.2576 32 1 -1.0578 -6.8439 4.3768 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393860409.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:23 Heat of formation + Delta-G solvation = 10.664161 kcal Electronic energy + Delta-G solvation = -12568.018808 eV Core-core repulsion = 10462.057951 eV Total energy + Delta-G solvation = -2105.960857 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.60039 -34.44757 -32.52043 -30.49352 -28.81182 -27.03934 -24.15015 -22.39153 -20.65560 -19.99671 -16.51154 -16.02335 -15.65865 -14.88601 -14.44966 -13.99374 -13.95233 -13.19679 -13.03606 -12.52322 -12.37586 -12.22310 -12.05774 -11.43573 -11.36214 -11.04944 -10.93887 -10.53953 -10.38011 -10.11068 -9.68596 -9.36747 -9.14574 -8.36604 -7.91586 -7.44053 -6.00441 -4.03253 1.94225 2.16649 3.30738 3.38193 3.41820 4.26873 4.35117 4.50555 4.83069 4.89704 5.21238 5.35661 5.41941 5.48023 5.54084 5.58632 5.68108 5.75012 5.85270 5.95248 6.17401 6.27824 6.36428 6.94535 7.41865 7.70086 7.78801 7.91005 8.06916 8.41796 9.04231 9.60708 11.11008 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.059198 B = 0.005826 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.878707 B = 4805.202373 C = 4823.243132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 C -0.127 4.127 4 S -0.280 6.280 5 C -0.077 4.077 6 C 0.088 3.912 7 H 0.072 0.928 8 N -0.664 5.664 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.346 0.654 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.014 0.986 31 H 0.027 0.973 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 13.738 -6.660 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.186 4.186 4 S -0.054 6.054 5 C -0.226 4.226 6 C -0.025 4.025 7 H 0.090 0.910 8 N -0.298 5.298 9 C -0.063 4.063 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 H 0.086 0.914 20 H 0.081 0.919 21 H 0.097 0.903 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.168 0.832 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.705 12.651 -8.323 15.857 hybrid contribution -0.121 0.547 2.449 2.513 sum 4.584 13.198 -5.873 15.156 Atomic orbital electron populations 1.21853 0.92002 1.03663 1.02453 1.23817 0.99515 0.97136 0.94135 1.21849 1.01212 0.93034 1.02505 1.88721 1.34606 1.59178 1.22868 1.24431 0.99505 1.06086 0.92618 1.22369 0.93199 0.90655 0.96289 0.90981 1.60504 1.11281 1.28770 1.29287 1.22260 1.01131 0.98086 0.84776 1.19064 0.94149 0.91415 0.96602 1.21197 1.24059 1.11863 0.98903 0.92703 1.25005 0.95171 0.96671 0.97526 1.69990 1.26863 1.20299 1.36016 0.86532 0.78005 0.78789 0.84638 1.19781 1.21034 1.20964 0.91375 0.91923 0.90271 0.91570 0.91627 0.91406 0.88491 0.88104 0.83186 0.92266 0.96455 0.96781 0.95510 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.12 37.15 0.30 -1.36 16 2 C -0.04 -0.44 1.31 -90.60 -0.12 -0.55 16 3 C -0.13 -1.21 8.99 37.16 0.33 -0.87 16 4 S -0.28 -4.14 23.66 -107.50 -2.54 -6.69 16 5 C -0.08 -1.04 7.40 37.18 0.28 -0.76 16 6 C 0.09 1.23 3.42 -67.67 -0.23 1.00 16 7 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 8 N -0.66 -11.67 6.18 -117.82 -0.73 -12.39 16 9 C 0.07 1.34 5.47 -3.82 -0.02 1.32 16 10 C 0.03 0.65 5.23 -27.89 -0.15 0.50 16 11 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 12 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 15 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.08 1.05 6.76 -51.93 -0.35 0.70 16 22 H 0.07 0.60 6.83 -51.93 -0.35 0.25 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.10 1.05 7.12 -51.93 -0.37 0.68 16 26 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.35 5.93 6.02 -39.29 -0.24 5.69 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 272.39 15.07 4.10 4.10 Total: -1.00 -30.16 272.39 -8.53 -38.69 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.06 Total: 0.10 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.02 Total: -14.18 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.01 Total: -38.59 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.54 Total: -6.69 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.16 -8.53 -38.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393860409.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.353 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds