Wall clock time and date at job start Mon Mar 30 2020 02:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 112.49360 * 2 1 4 4 S 1.81426 * 113.14876 * 230.17760 * 2 1 3 5 5 C 1.81425 * 73.13846 * 216.13412 * 4 2 1 6 6 C 1.53040 * 113.15333 * 129.77829 * 2 1 3 7 7 H 1.09004 * 113.15233 * 263.44974 * 6 2 1 8 8 N 1.46901 * 113.14901 * 32.89898 * 6 2 1 9 9 C 1.46905 * 110.99870 * 205.00184 * 8 6 2 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47393 * 180.02562 * 10 9 8 12 12 H 1.08010 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00736 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99548 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00627 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47294 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47394 * 119.99957 * 15 13 11 18 18 H 1.48499 * 109.47384 * 240.00136 * 15 13 11 19 19 H 1.09004 * 109.46939 * 290.21945 * 1 2 3 20 20 H 1.08998 * 109.47835 * 50.22344 * 1 2 3 21 21 H 1.09003 * 109.47411 * 170.22346 * 1 2 3 22 22 H 1.08997 * 109.47058 * 189.77937 * 3 2 1 23 23 H 1.09004 * 109.47341 * 309.78010 * 3 2 1 24 24 H 1.08996 * 109.46855 * 69.77664 * 3 2 1 25 25 H 1.08994 * 113.15066 * 273.34121 * 5 4 2 26 26 H 1.09004 * 113.14469 * 143.85555 * 5 4 2 27 27 H 1.00901 * 111.00067 * 328.95360 * 8 6 2 28 28 H 1.09001 * 109.46798 * 300.00327 * 9 8 6 29 29 H 1.08998 * 109.46961 * 60.00043 * 9 8 6 30 30 H 1.09001 * 109.47393 * 299.99719 * 10 9 8 31 31 H 1.08998 * 109.47408 * 60.00073 * 10 9 8 32 32 H 0.97002 * 119.99722 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1153 1.4136 0.0000 4 16 2.2432 -1.0683 -1.2812 5 6 3.3257 -1.1918 0.1695 6 6 2.1317 -0.9003 1.0814 7 1 2.4053 -0.3585 1.9868 8 7 1.3160 -2.0892 1.3628 9 6 1.5608 -2.5856 2.7236 10 6 0.6961 -3.8216 2.9788 11 6 0.9467 -4.3305 4.3750 12 1 1.6526 -3.8232 5.0160 13 6 0.2750 -5.4436 4.8341 14 7 -0.5850 -6.0610 4.0536 15 14 0.5862 -6.0747 6.5644 16 1 1.5905 -5.2096 7.2338 17 1 -0.6821 -6.0485 7.3365 18 1 1.0970 -7.4675 6.4989 19 1 -0.3633 0.3552 0.9644 20 1 -0.3635 0.6575 -0.7898 21 1 -0.3634 -1.0128 -0.1745 22 1 3.1900 1.3618 -0.1745 23 1 1.6468 2.0009 -0.7898 24 1 1.9261 1.8852 0.9643 25 1 4.0892 -0.4146 0.2017 26 1 3.7396 -2.1901 0.3115 27 1 0.3359 -1.8977 1.2187 28 1 2.6128 -2.8502 2.8300 29 1 1.3068 -1.8088 3.4448 30 1 -0.3560 -3.5573 2.8723 31 1 0.9504 -4.5983 2.2576 32 1 -1.0578 -6.8439 4.3768 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393860409.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:23 Heat of formation + Delta-G solvation = -8.641935 kcal Electronic energy + Delta-G solvation = -12568.855983 eV Core-core repulsion = 10462.057951 eV Total energy + Delta-G solvation = -2106.798032 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.74641 -36.15162 -34.38722 -31.72948 -30.40143 -28.11088 -26.00280 -23.58982 -22.37871 -21.18672 -18.51975 -17.40883 -16.79314 -16.44856 -16.03477 -15.42271 -15.05075 -14.59552 -14.30088 -13.94054 -13.84804 -13.21192 -13.20155 -13.04378 -12.85990 -12.48954 -12.38846 -12.24189 -11.98175 -11.42095 -11.39607 -11.23342 -10.71867 -10.56132 -9.30893 -8.60981 -8.19552 -6.31071 0.92945 1.06885 1.41515 1.42100 1.55228 2.41157 3.13400 3.14496 3.24105 3.85695 3.97788 4.13486 4.36170 4.46911 4.57702 4.61515 4.68414 4.71358 4.79547 4.88268 4.90470 5.08761 5.16022 5.28914 5.46567 5.67853 5.79503 6.13399 6.26861 6.48889 6.87109 7.38592 8.92974 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.059198 B = 0.005826 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.878707 B = 4805.202373 C = 4823.243132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.013 4.013 3 C -0.123 4.123 4 S -0.347 6.347 5 C -0.063 4.063 6 C 0.080 3.920 7 H 0.093 0.907 8 N -0.677 5.677 9 C 0.086 3.914 10 C 0.031 3.969 11 C -0.541 4.541 12 H 0.063 0.937 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.259 1.259 17 H -0.278 1.278 18 H -0.280 1.280 19 H 0.081 0.919 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.130 0.870 26 H 0.083 0.917 27 H 0.346 0.654 28 H 0.059 0.941 29 H 0.028 0.972 30 H -0.009 1.009 31 H -0.010 1.010 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 15.529 -5.381 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.182 4.182 4 S -0.121 6.121 5 C -0.212 4.212 6 C -0.032 4.032 7 H 0.110 0.890 8 N -0.311 5.311 9 C -0.042 4.042 10 C -0.007 4.007 11 C -0.580 4.580 12 H 0.082 0.918 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.183 1.183 17 H -0.204 1.204 18 H -0.206 1.206 19 H 0.100 0.900 20 H 0.095 0.905 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.106 0.894 25 H 0.148 0.852 26 H 0.101 0.899 27 H 0.169 0.831 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.010 0.990 31 H 0.009 0.991 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.641 14.464 -7.053 17.052 hybrid contribution -0.430 0.006 2.000 2.046 sum 5.211 14.469 -5.053 16.188 Atomic orbital electron populations 1.21861 0.91797 1.02744 1.03704 1.23874 0.99657 0.97788 0.90965 1.21877 1.01561 0.90827 1.03970 1.89027 1.36761 1.61192 1.25145 1.24497 0.99577 1.06282 0.90843 1.22457 0.93155 0.89915 0.97678 0.88957 1.60364 1.11974 1.31422 1.27329 1.21841 0.99635 0.96028 0.86736 1.18917 0.93837 0.92863 0.95055 1.21646 1.24126 1.12249 0.99936 0.91842 1.25995 0.94768 0.96937 1.02191 1.70131 1.27993 1.20917 1.38353 0.85359 0.78281 0.78158 0.78988 1.18321 1.20368 1.20594 0.90045 0.90481 0.92492 0.90819 0.90721 0.89437 0.85157 0.89854 0.83121 0.92241 0.95372 0.99048 0.99136 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.12 71.98 0.58 -2.54 16 2 C -0.01 -0.28 1.31 -10.78 -0.01 -0.30 16 3 C -0.12 -1.90 8.99 71.98 0.65 -1.25 16 4 S -0.35 -10.07 23.66 -56.49 -1.34 -11.41 16 5 C -0.06 -1.59 7.40 72.00 0.53 -1.05 16 6 C 0.08 2.09 3.42 44.94 0.15 2.24 16 7 H 0.09 2.12 7.84 -2.39 -0.02 2.10 16 8 N -0.68 -23.54 6.18 -526.66 -3.26 -26.80 16 9 C 0.09 3.50 5.47 86.30 0.47 3.97 16 10 C 0.03 1.64 5.23 29.85 0.16 1.79 16 11 C -0.54 -30.65 9.11 25.60 0.23 -30.42 16 12 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 15 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 16 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 20 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.06 1.51 6.76 -2.39 -0.02 1.49 16 22 H 0.07 1.05 6.83 -2.39 -0.02 1.04 16 23 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.13 2.41 7.12 -2.39 -0.02 2.39 16 26 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 27 H 0.35 11.94 6.02 -89.69 -0.54 11.40 16 28 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 32 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -65.75 272.39 1.49 -64.26 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.54 Total: 12.12 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 3.23 Total: -27.16 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.97 Total: -83.92 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -10.07 SS G_CDS: -1.34 Total: -11.41 kcal Total: -65.75 1.49 -64.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393860409.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.622 kcal (2) G-P(sol) polarization free energy of solvation -65.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds