Wall clock time and date at job start Mon Mar 30 2020 02:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 115.54722 * 2 1 4 4 O 1.21277 * 120.00117 * 214.42001 * 3 2 1 5 5 N 1.34778 * 120.00218 * 34.41732 * 3 2 1 6 6 C 1.46497 * 120.00209 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47102 * 180.02562 * 6 5 3 8 8 C 1.50701 * 109.47110 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99667 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99847 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00238 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99735 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46747 * 90.00454 * 12 10 8 14 14 H 1.48499 * 109.47124 * 210.00142 * 12 10 8 15 15 H 1.48494 * 109.47472 * 330.00465 * 12 10 8 16 16 C 1.53004 * 117.49755 * 214.33196 * 2 1 3 17 17 C 1.52994 * 117.50121 * 145.70951 * 2 1 3 18 18 H 1.09000 * 117.50003 * 214.98206 * 17 2 1 19 19 F 1.39909 * 117.49784 * 0.02562 * 17 2 1 20 20 H 1.09001 * 109.47002 * 205.66706 * 1 2 3 21 21 H 1.08993 * 109.46955 * 325.67143 * 1 2 3 22 22 H 1.09000 * 109.47050 * 85.66972 * 1 2 3 23 23 H 0.97001 * 119.99890 * 359.97438 * 5 3 2 24 24 H 1.09002 * 109.47192 * 299.99908 * 6 5 3 25 25 H 1.09003 * 109.47147 * 59.99992 * 6 5 3 26 26 H 1.09002 * 109.46736 * 299.99837 * 7 6 5 27 27 H 1.08989 * 109.47455 * 59.99748 * 7 6 5 28 28 H 0.97006 * 119.99785 * 180.02562 * 11 10 8 29 29 H 1.08991 * 117.49774 * 359.97438 * 16 2 1 30 30 H 1.08997 * 117.49444 * 144.99595 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2232 1.5332 -0.5937 5 7 1.6019 2.3829 0.6597 6 6 2.2339 3.7045 0.6602 7 6 1.3805 4.6777 1.4759 8 6 2.0304 6.0374 1.4759 9 1 2.9594 6.1918 0.9473 10 6 1.4389 7.0842 2.1507 11 7 0.3079 6.8960 2.7948 12 14 2.2449 8.7694 2.1512 13 1 1.7448 9.5575 0.9961 14 1 1.9126 9.4766 3.4140 15 1 3.7177 8.6138 2.0438 16 6 2.2365 -1.1207 -0.7654 17 6 2.2365 -1.1212 0.7646 18 1 3.1716 -0.8755 1.2679 19 9 1.4340 -2.0684 1.4098 20 1 -0.3633 -0.9263 0.4451 21 1 -0.3633 0.8486 0.5795 22 1 -0.3633 0.0776 -1.0247 23 1 0.7673 2.2443 1.1342 24 1 3.2268 3.6323 1.1043 25 1 2.3197 4.0667 -0.3644 26 1 0.3875 4.7500 1.0322 27 1 1.2952 4.3155 2.5003 28 1 -0.1084 7.6326 3.2692 29 1 1.6113 -1.8582 -1.2686 30 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399319548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:41 Heat of formation + Delta-G solvation = -97.688590 kcal Electronic energy + Delta-G solvation = -14035.022249 eV Core-core repulsion = 11358.149688 eV Total energy + Delta-G solvation = -2676.872561 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.76386 -41.09483 -37.49559 -36.55262 -34.86701 -31.75777 -29.57045 -27.00589 -24.36519 -23.44254 -22.73221 -20.59689 -18.69855 -18.47223 -17.24080 -16.93706 -16.56230 -16.33658 -15.97797 -15.70045 -14.78453 -14.62303 -14.33382 -14.00461 -13.40356 -13.29096 -13.21537 -12.99304 -12.92712 -12.54195 -12.26845 -11.70277 -11.55726 -11.42302 -11.04406 -10.75686 -10.61654 -10.07563 -8.25082 -6.35874 1.30954 1.42009 1.42382 1.53847 2.09243 2.42227 2.51936 3.05702 3.09947 3.38101 3.61958 3.79706 3.92227 4.42139 4.46217 4.58164 4.73630 4.77534 4.78996 4.82701 5.06233 5.17636 5.24199 5.45799 5.55495 5.76688 6.14171 6.52883 6.77376 7.15712 7.33810 8.86828 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.061004 B = 0.005395 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.876154 B = 5188.960361 C = 5403.708928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.185 4.185 3 C 0.542 3.458 4 O -0.581 6.581 5 N -0.711 5.711 6 C 0.139 3.861 7 C 0.022 3.978 8 C -0.548 4.548 9 H 0.060 0.940 10 C 0.008 3.992 11 N -0.927 5.927 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.266 1.266 16 C -0.137 4.137 17 C 0.048 3.952 18 H 0.142 0.858 19 F -0.180 7.180 20 H 0.084 0.916 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.410 0.590 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.009 0.991 27 H 0.008 0.992 28 H 0.266 0.734 29 H 0.138 0.862 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -14.941 -4.351 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.189 4.189 3 C 0.329 3.671 4 O -0.462 6.462 5 N -0.362 5.362 6 C 0.016 3.984 7 C -0.016 4.016 8 C -0.586 4.586 9 H 0.078 0.922 10 C -0.191 4.191 11 N -0.566 5.566 12 Si 0.790 3.210 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.190 1.190 16 C -0.175 4.175 17 C 0.011 3.989 18 H 0.160 0.840 19 F -0.160 7.160 20 H 0.103 0.897 21 H 0.085 0.915 22 H 0.099 0.901 23 H 0.246 0.754 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.156 0.844 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.656 -14.730 -4.627 15.453 hybrid contribution -0.243 1.023 0.485 1.158 sum 0.413 -13.707 -4.142 14.325 Atomic orbital electron populations 1.21355 0.88134 1.03958 1.03920 1.22269 0.98365 0.88643 1.09624 1.19842 0.83904 0.85617 0.77760 1.90655 1.25010 1.84800 1.45743 1.46147 1.27459 1.10000 1.52564 1.21283 0.96340 0.81056 0.99717 1.19144 0.94838 0.93121 0.94491 1.21463 1.08719 0.95514 1.32898 0.92211 1.25871 0.95430 1.03264 0.94552 1.70059 1.18942 1.33608 1.34038 0.85436 0.79019 0.78795 0.77747 1.19732 1.20547 1.19023 1.23848 1.03631 0.97392 0.92604 1.22230 0.94076 0.89206 0.93344 0.84032 1.92797 1.75465 1.64935 1.82801 0.89714 0.91454 0.90088 0.75368 0.93259 0.93230 0.97281 0.97340 0.92514 0.84412 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 9.76 71.98 0.70 -1.56 16 2 C -0.19 -4.39 2.61 -52.93 -0.14 -4.53 16 3 C 0.54 17.83 7.39 87.66 0.65 18.47 16 4 O -0.58 -23.13 16.26 -3.02 -0.05 -23.18 16 5 N -0.71 -24.66 5.45 -463.06 -2.53 -27.19 16 6 C 0.14 5.95 5.61 86.38 0.48 6.43 16 7 C 0.02 1.08 5.09 29.85 0.15 1.23 16 8 C -0.55 -30.42 9.11 25.60 0.23 -30.19 16 9 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 10 C 0.01 0.43 5.46 84.65 0.46 0.89 16 11 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 12 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 16 C -0.14 -2.64 9.75 30.60 0.30 -2.34 16 17 C 0.05 1.01 7.54 30.59 0.23 1.24 16 18 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 19 F -0.18 -3.95 16.50 44.97 0.74 -3.21 16 20 H 0.08 1.45 7.10 -2.39 -0.02 1.43 16 21 H 0.07 1.34 6.38 -2.39 -0.02 1.32 16 22 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.41 12.47 6.77 -92.71 -0.63 11.85 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 29 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.12 2.45 7.67 -2.39 -0.02 2.43 16 Total: -1.00 -64.61 265.65 4.06 -60.54 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.51 Total: 11.93 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 3.07 Total: -10.35 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.24 Total: -81.08 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.74 Total: -3.21 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -64.61 4.06 -60.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399319548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.148 kcal (2) G-P(sol) polarization free energy of solvation -64.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds