Wall clock time and date at job start Mon Mar 30 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 115.55159 * 2 1 4 4 O 1.21283 * 120.00367 * 145.66178 * 3 2 1 5 5 N 1.34784 * 119.99992 * 325.67096 * 3 2 1 6 6 C 1.46499 * 119.99897 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47073 * 179.97438 * 6 5 3 8 8 C 1.50694 * 109.47168 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.53001 * 117.49400 * 145.66529 * 2 1 3 17 17 C 1.52995 * 117.52008 * 214.29546 * 2 1 3 18 18 H 1.08994 * 117.50162 * 145.03290 * 17 2 1 19 19 F 1.39904 * 117.49867 * 0.02562 * 17 2 1 20 20 H 1.08999 * 109.46906 * 34.41952 * 1 2 3 21 21 H 1.08998 * 109.46960 * 154.41781 * 1 2 3 22 22 H 1.08995 * 109.47508 * 274.41956 * 1 2 3 23 23 H 0.96991 * 119.99637 * 359.97438 * 5 3 2 24 24 H 1.09002 * 109.47239 * 59.99631 * 6 5 3 25 25 H 1.08998 * 109.47134 * 299.99061 * 6 5 3 26 26 H 1.09007 * 109.46922 * 59.99533 * 7 6 5 27 27 H 1.09003 * 109.46836 * 300.00289 * 7 6 5 28 28 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 29 29 H 1.08998 * 117.49739 * 215.00297 * 16 2 1 30 30 H 1.08995 * 117.50148 * 0.02562 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2240 1.5327 0.5925 5 7 1.6010 2.3833 -0.6583 6 6 2.2332 3.7049 -0.6587 7 6 1.3787 4.6787 -1.4727 8 6 2.0287 6.0383 -1.4726 9 1 2.9584 6.1924 -0.9452 10 6 1.4363 7.0856 -2.1459 11 7 0.3043 6.8979 -2.7886 12 14 2.2416 8.7711 -2.1453 13 1 1.4123 9.7163 -2.9354 14 1 2.3592 9.2630 -0.7491 15 1 3.5938 8.6739 -2.7514 16 6 2.2364 -1.1207 0.7655 17 6 2.2369 -1.1209 -0.7645 18 1 3.1721 -0.8751 -1.2675 19 9 1.4349 -2.0676 -1.4109 20 1 -0.3633 0.8477 -0.5809 21 1 -0.3633 -0.9269 -0.4437 22 1 -0.3634 0.0792 1.0245 23 1 0.7662 2.2449 -1.1323 24 1 3.2254 3.6329 -1.1042 25 1 2.3202 4.0664 0.3659 26 1 0.3863 4.7507 -1.0275 27 1 1.2919 4.3170 -2.4973 28 1 -0.1126 7.6348 -3.2620 29 1 3.1712 -0.8746 1.2690 30 1 1.6111 -1.8582 1.2687 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399319551.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:47 Heat of formation + Delta-G solvation = -77.821906 kcal Electronic energy + Delta-G solvation = -14034.090963 eV Core-core repulsion = 11358.079886 eV Total energy + Delta-G solvation = -2676.011077 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.82474 -39.77178 -36.34023 -34.91605 -32.89873 -29.99462 -28.52664 -25.17305 -22.91622 -22.51265 -20.96426 -19.29169 -17.56397 -16.47591 -16.19126 -15.46879 -15.03049 -14.95834 -14.52563 -14.38892 -13.39391 -13.19729 -12.94924 -12.47824 -12.44932 -12.28397 -12.01657 -11.23755 -11.04679 -10.69376 -10.52206 -10.37399 -10.10270 -9.82050 -9.49206 -9.23857 -8.59899 -8.39789 -6.11536 -4.14799 2.54857 3.29828 3.33478 3.34759 3.40987 3.56320 4.05681 4.32509 4.39399 4.60368 4.82029 4.93325 5.25467 5.41756 5.57734 5.61170 5.63032 5.92151 6.02162 6.28679 6.29165 6.67993 6.83069 7.47525 7.57587 7.85754 7.92575 8.23982 8.53618 8.90797 9.50178 11.00025 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.061015 B = 0.005395 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.793783 B = 5189.072728 C = 5403.772047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.174 4.174 3 C 0.542 3.458 4 O -0.547 6.547 5 N -0.713 5.713 6 C 0.121 3.879 7 C 0.012 3.988 8 C -0.524 4.524 9 H 0.059 0.941 10 C 0.060 3.940 11 N -0.894 5.894 12 Si 0.898 3.102 13 H -0.287 1.287 14 H -0.275 1.275 15 H -0.276 1.276 16 C -0.154 4.154 17 C 0.043 3.957 18 H 0.138 0.862 19 F -0.179 7.179 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.399 0.601 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.123 0.877 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 -14.335 3.963 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.326 3.674 4 O -0.425 6.425 5 N -0.363 5.363 6 C -0.001 4.001 7 C -0.025 4.025 8 C -0.562 4.562 9 H 0.077 0.923 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.725 3.275 13 H -0.212 1.212 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.192 4.192 17 C 0.007 3.993 18 H 0.155 0.845 19 F -0.159 7.159 20 H 0.089 0.911 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.234 0.766 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.589 -14.095 4.243 14.732 hybrid contribution -0.200 0.877 -0.368 0.972 sum 0.390 -13.218 3.875 13.779 Atomic orbital electron populations 1.21324 0.89740 1.03443 1.03132 1.22331 0.97313 0.90824 1.07353 1.19218 0.84505 0.84521 0.79152 1.90676 1.23346 1.84013 1.44503 1.46308 1.26969 1.10963 1.52063 1.21784 0.97323 0.79864 1.01172 1.19328 0.95169 0.93031 0.94982 1.21002 1.08337 0.93977 1.32899 0.92280 1.24997 0.94904 0.99239 0.95086 1.69945 1.17552 1.32396 1.33379 0.86559 0.79332 0.83350 0.78219 1.21210 1.20094 1.20100 1.23735 1.03836 0.98510 0.93074 1.22181 0.94434 0.90097 0.92600 0.84479 1.92794 1.75381 1.65081 1.82619 0.91122 0.90958 0.91084 0.76607 0.92417 0.92369 0.95892 0.95887 0.92744 0.85899 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.76 37.16 0.36 -0.92 16 2 C -0.17 -2.22 2.61 -155.66 -0.41 -2.63 16 3 C 0.54 9.10 7.39 -10.98 -0.08 9.02 16 4 O -0.55 -10.96 16.26 5.55 0.09 -10.87 16 5 N -0.71 -12.44 5.45 -60.29 -0.33 -12.77 16 6 C 0.12 2.54 5.61 -4.04 -0.02 2.52 16 7 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 8 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 9 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 12 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 C -0.15 -1.67 9.75 -26.73 -0.26 -1.93 16 17 C 0.04 0.50 7.54 -26.73 -0.20 0.30 16 18 H 0.14 1.49 8.14 -51.93 -0.42 1.07 16 19 F -0.18 -2.18 16.50 2.25 0.04 -2.14 16 20 H 0.07 0.75 6.38 -51.93 -0.33 0.42 16 21 H 0.07 0.72 7.10 -51.93 -0.37 0.35 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.40 6.14 6.77 -40.82 -0.28 5.86 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.12 1.39 7.67 -51.93 -0.40 0.99 16 30 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 265.65 15.07 4.00 4.00 Total: -1.00 -30.66 265.65 -5.52 -36.18 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -3.88 Total: 1.30 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.16 Total: -6.66 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.41 Total: -38.03 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.66 -5.52 -36.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399319551.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.645 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds