Wall clock time and date at job start Mon Mar 30 2020 02:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 115.55159 * 2 1 4 4 O 1.21283 * 120.00367 * 145.66178 * 3 2 1 5 5 N 1.34784 * 119.99992 * 325.67096 * 3 2 1 6 6 C 1.46499 * 119.99897 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47073 * 179.97438 * 6 5 3 8 8 C 1.50694 * 109.47168 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.53001 * 117.49400 * 145.66529 * 2 1 3 17 17 C 1.52995 * 117.52008 * 214.29546 * 2 1 3 18 18 H 1.08994 * 117.50162 * 145.03290 * 17 2 1 19 19 F 1.39904 * 117.49867 * 0.02562 * 17 2 1 20 20 H 1.08999 * 109.46906 * 34.41952 * 1 2 3 21 21 H 1.08998 * 109.46960 * 154.41781 * 1 2 3 22 22 H 1.08995 * 109.47508 * 274.41956 * 1 2 3 23 23 H 0.96991 * 119.99637 * 359.97438 * 5 3 2 24 24 H 1.09002 * 109.47239 * 59.99631 * 6 5 3 25 25 H 1.08998 * 109.47134 * 299.99061 * 6 5 3 26 26 H 1.09007 * 109.46922 * 59.99533 * 7 6 5 27 27 H 1.09003 * 109.46836 * 300.00289 * 7 6 5 28 28 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 29 29 H 1.08998 * 117.49739 * 215.00297 * 16 2 1 30 30 H 1.08995 * 117.50148 * 0.02562 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2240 1.5327 0.5925 5 7 1.6010 2.3833 -0.6583 6 6 2.2332 3.7049 -0.6587 7 6 1.3787 4.6787 -1.4727 8 6 2.0287 6.0383 -1.4726 9 1 2.9584 6.1924 -0.9452 10 6 1.4363 7.0856 -2.1459 11 7 0.3043 6.8979 -2.7886 12 14 2.2416 8.7711 -2.1453 13 1 1.4123 9.7163 -2.9354 14 1 2.3592 9.2630 -0.7491 15 1 3.5938 8.6739 -2.7514 16 6 2.2364 -1.1207 0.7655 17 6 2.2369 -1.1209 -0.7645 18 1 3.1721 -0.8751 -1.2675 19 9 1.4349 -2.0676 -1.4109 20 1 -0.3633 0.8477 -0.5809 21 1 -0.3633 -0.9269 -0.4437 22 1 -0.3634 0.0792 1.0245 23 1 0.7662 2.2449 -1.1323 24 1 3.2254 3.6329 -1.1042 25 1 2.3202 4.0664 0.3659 26 1 0.3863 4.7507 -1.0275 27 1 1.2919 4.3170 -2.4973 28 1 -0.1126 7.6348 -3.2620 29 1 3.1712 -0.8746 1.2690 30 1 1.6111 -1.8582 1.2687 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399319551.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:46 Heat of formation + Delta-G solvation = -97.641479 kcal Electronic energy + Delta-G solvation = -14034.950404 eV Core-core repulsion = 11358.079886 eV Total energy + Delta-G solvation = -2676.870518 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.76456 -41.09453 -37.49545 -36.55156 -34.86517 -31.75714 -29.57036 -27.00388 -24.36460 -23.44298 -22.73176 -20.59651 -18.69793 -18.46964 -17.24026 -16.93578 -16.56383 -16.33864 -15.97806 -15.70006 -14.78380 -14.62297 -14.32644 -14.00463 -13.40412 -13.29175 -13.21889 -12.98640 -12.91850 -12.55310 -12.25854 -11.70200 -11.56174 -11.43357 -11.04459 -10.75702 -10.61031 -10.07554 -8.24826 -6.35710 1.30908 1.42053 1.44225 1.52257 2.09272 2.42376 2.51925 3.05679 3.10079 3.38063 3.61931 3.79692 3.92297 4.42147 4.46236 4.58153 4.73605 4.77554 4.78972 4.82698 5.06221 5.17640 5.24182 5.45687 5.55513 5.76670 6.14256 6.52869 6.77313 7.15693 7.33849 8.86877 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.061015 B = 0.005395 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.793783 B = 5189.072728 C = 5403.772047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.185 4.185 3 C 0.542 3.458 4 O -0.581 6.581 5 N -0.711 5.711 6 C 0.139 3.861 7 C 0.022 3.978 8 C -0.549 4.549 9 H 0.060 0.940 10 C 0.008 3.992 11 N -0.927 5.927 12 Si 0.965 3.035 13 H -0.281 1.281 14 H -0.268 1.268 15 H -0.268 1.268 16 C -0.137 4.137 17 C 0.048 3.952 18 H 0.142 0.858 19 F -0.180 7.180 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.409 0.591 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.009 0.991 27 H 0.008 0.992 28 H 0.266 0.734 29 H 0.118 0.882 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -14.937 4.338 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.189 4.189 3 C 0.329 3.671 4 O -0.462 6.462 5 N -0.362 5.362 6 C 0.016 3.984 7 C -0.016 4.016 8 C -0.587 4.587 9 H 0.078 0.922 10 C -0.191 4.191 11 N -0.566 5.566 12 Si 0.790 3.210 13 H -0.206 1.206 14 H -0.193 1.193 15 H -0.193 1.193 16 C -0.175 4.175 17 C 0.011 3.989 18 H 0.160 0.840 19 F -0.160 7.160 20 H 0.085 0.915 21 H 0.103 0.897 22 H 0.099 0.901 23 H 0.246 0.754 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.659 -14.722 4.615 15.443 hybrid contribution -0.230 1.018 -0.487 1.151 sum 0.429 -13.705 4.129 14.319 Atomic orbital electron populations 1.21353 0.88133 1.03960 1.03919 1.22267 0.98365 0.88643 1.09627 1.19845 0.83915 0.85616 0.77751 1.90656 1.24965 1.84816 1.45773 1.46147 1.27410 1.09980 1.52636 1.21284 0.96343 0.81055 0.99717 1.19140 0.94828 0.93105 0.94485 1.21438 1.08677 0.95519 1.33077 0.92197 1.25876 0.95410 1.03266 0.94549 1.70053 1.18831 1.33696 1.34047 0.85492 0.78513 0.78453 0.78557 1.20602 1.19298 1.19330 1.23849 1.03630 0.97391 0.92595 1.22228 0.94079 0.89219 0.93331 0.84040 1.92796 1.75489 1.64971 1.82743 0.91456 0.89714 0.90087 0.75370 0.93247 0.93236 0.97290 0.97362 0.92508 0.86350 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 9.76 71.98 0.70 -1.56 16 2 C -0.19 -4.39 2.61 -52.93 -0.14 -4.53 16 3 C 0.54 17.83 7.39 87.65 0.65 18.48 16 4 O -0.58 -23.13 16.26 -3.04 -0.05 -23.18 16 5 N -0.71 -24.67 5.45 -463.06 -2.53 -27.20 16 6 C 0.14 5.95 5.61 86.38 0.48 6.43 16 7 C 0.02 1.10 5.09 29.85 0.15 1.25 16 8 C -0.55 -30.49 9.11 25.60 0.23 -30.26 16 9 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 10 C 0.01 0.44 5.46 84.66 0.46 0.90 16 11 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 12 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 16 C -0.14 -2.64 9.75 30.60 0.30 -2.34 16 17 C 0.05 1.01 7.54 30.59 0.23 1.24 16 18 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 19 F -0.18 -3.95 16.50 44.97 0.74 -3.21 16 20 H 0.07 1.34 6.38 -2.39 -0.02 1.32 16 21 H 0.08 1.45 7.10 -2.39 -0.02 1.43 16 22 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.41 12.48 6.77 -92.71 -0.63 11.85 16 24 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.12 2.45 7.67 -2.39 -0.02 2.43 16 30 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -64.57 265.65 4.06 -60.50 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.51 Total: 12.05 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 3.07 Total: -10.38 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.24 Total: -81.10 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.74 Total: -3.21 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.57 4.06 -60.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399319551.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.137 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds