Wall clock time and date at job start Mon Mar 30 2020 02:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86796 * 120.00049 * 2 1 4 4 H 1.48498 * 109.47392 * 264.76517 * 3 2 1 5 5 H 1.48495 * 109.47258 * 24.76485 * 3 2 1 6 6 H 1.48508 * 109.47310 * 144.76587 * 3 2 1 7 7 C 1.40054 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99709 * 350.18685 * 7 2 1 9 9 C 1.46373 * 120.00088 * 170.18327 * 7 2 1 10 10 O 1.21687 * 120.00320 * 342.42216 * 9 7 2 11 11 N 1.34776 * 119.99744 * 162.41620 * 9 7 2 12 12 C 1.46927 * 120.63084 * 174.82814 * 11 9 7 13 13 C 1.53191 * 108.89291 * 126.34397 * 12 11 9 14 14 C 1.53350 * 109.14875 * 54.57945 * 13 12 11 15 15 C 1.52996 * 109.41789 * 178.67367 * 14 13 12 16 16 F 1.39901 * 109.47330 * 300.12653 * 15 14 13 17 17 C 1.53041 * 109.60890 * 298.71037 * 14 13 12 18 18 C 1.46926 * 120.63008 * 354.85408 * 11 9 7 19 19 H 0.97003 * 120.00402 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.58328 * 246.20374 * 12 11 9 21 21 H 1.09001 * 109.58528 * 6.48441 * 12 11 9 22 22 H 1.09002 * 109.49752 * 174.65778 * 13 12 11 23 23 H 1.08997 * 109.49941 * 294.75313 * 13 12 11 24 24 H 1.08995 * 109.42091 * 58.75219 * 14 13 12 25 25 H 1.09001 * 109.47273 * 60.12647 * 15 14 13 26 26 H 1.08997 * 109.47617 * 180.12464 * 15 14 13 27 27 H 1.09001 * 109.49382 * 301.42666 * 17 14 13 28 28 H 1.08996 * 109.52486 * 181.34217 * 17 14 13 29 29 H 1.09000 * 109.59180 * 353.36859 * 18 11 9 30 30 H 1.09000 * 109.58736 * 113.65660 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5988 1.9826 -1.3942 5 1 1.3872 2.6820 0.5865 6 1 3.4786 1.4746 0.8078 7 6 2.0070 -1.2129 -0.0005 8 1 1.4788 -2.1414 0.1585 9 6 3.4546 -1.2220 -0.2167 10 8 4.0031 -0.2518 -0.7053 11 7 4.1802 -2.3050 0.1257 12 6 5.6140 -2.3750 -0.1876 13 6 6.3880 -2.6845 1.0976 14 6 5.8177 -3.9578 1.7340 15 6 6.6081 -4.2912 3.0009 16 9 7.9529 -4.4926 2.6722 17 6 4.3467 -3.7376 2.0940 18 6 3.5523 -3.4382 0.8187 19 1 -0.4851 0.8400 0.0004 20 1 5.7900 -3.1637 -0.9191 21 1 5.9465 -1.4195 -0.5933 22 1 7.4417 -2.8325 0.8610 23 1 6.2845 -1.8524 1.7940 24 1 5.8990 -4.7838 1.0275 25 1 6.5266 -3.4655 3.7078 26 1 6.2049 -5.1974 3.4529 27 1 4.2624 -2.8957 2.7812 28 1 3.9493 -4.6352 2.5679 29 1 2.5251 -3.1834 1.0795 30 1 3.5581 -4.3129 0.1684 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409425788.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:38 Heat of formation + Delta-G solvation = -112.741587 kcal Electronic energy + Delta-G solvation = -14805.526328 eV Core-core repulsion = 12128.001020 eV Total energy + Delta-G solvation = -2677.525308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.57647 -38.89466 -36.45129 -32.87237 -32.71938 -30.75776 -27.57092 -26.28707 -22.82509 -22.67873 -20.46133 -18.97823 -16.83678 -16.05603 -15.86300 -15.65379 -15.11655 -14.68686 -14.18705 -14.02112 -13.48837 -13.11201 -12.47180 -12.15052 -12.10720 -11.98075 -11.67381 -11.07632 -11.00446 -10.73677 -10.60530 -10.44339 -10.26406 -10.05200 -9.46270 -9.02295 -7.94514 -7.55416 -6.63515 -4.83938 3.43820 3.47141 3.68931 4.15945 4.22943 4.52568 4.62185 4.71229 4.87132 5.03352 5.28550 5.42624 5.48242 5.62480 5.71276 5.77997 5.89174 6.04563 6.16832 6.22849 6.37575 6.38984 6.45442 6.65216 7.08608 7.64596 7.86823 8.30718 8.70956 9.13538 10.03187 10.37766 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.050560 B = 0.008297 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.660296 B = 3373.825585 C = 3590.707977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.103 3.897 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.319 1.319 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.555 3.445 10 O -0.617 6.617 11 N -0.633 5.633 12 C 0.118 3.882 13 C -0.128 4.128 14 C -0.118 4.118 15 C 0.065 3.935 16 F -0.222 7.222 17 C -0.128 4.128 18 C 0.122 3.878 19 H 0.282 0.718 20 H 0.046 0.954 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.432 -8.262 5.741 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.115 4.115 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.250 1.250 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.108 0.892 9 C 0.365 3.635 10 O -0.509 6.509 11 N -0.367 5.367 12 C -0.006 4.006 13 C -0.166 4.166 14 C -0.137 4.137 15 C 0.010 3.990 16 F -0.203 7.203 17 C -0.166 4.166 18 C -0.002 4.002 19 H 0.092 0.908 20 H 0.064 0.936 21 H 0.105 0.895 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.537 -7.742 5.476 12.759 hybrid contribution 0.326 0.473 0.044 0.577 sum 8.863 -7.269 5.520 12.723 Atomic orbital electron populations 1.69558 1.07897 1.29957 1.38457 1.25724 0.94690 1.01910 0.89134 0.85306 0.77712 0.77735 0.79754 1.20235 1.25038 1.19338 1.20755 0.89139 0.95852 1.51327 0.89164 1.18358 0.88059 0.79918 0.77200 1.90218 1.73492 1.34826 1.52378 1.47735 1.07540 1.19385 1.62041 1.21208 0.82523 1.01941 0.94893 1.21995 0.99254 0.96766 0.98597 1.21803 0.95916 0.99349 0.96618 1.22107 0.76610 1.02204 0.98037 1.92734 1.36491 1.96717 1.94356 1.21919 0.93589 1.01766 0.99364 1.21446 0.98444 0.88883 0.91431 0.90810 0.93550 0.89541 0.91256 0.91631 0.90309 0.90929 0.91020 0.91215 0.91303 0.88122 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.44 13.92 55.55 0.77 -22.66 16 2 C 0.10 2.94 5.52 -17.37 -0.10 2.84 16 3 Si 0.96 25.45 25.83 -169.99 -4.39 21.06 16 4 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 5 H -0.32 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -7.39 6.82 56.52 0.39 -7.00 16 7 C -0.54 -14.97 9.08 -35.63 -0.32 -15.30 16 8 H 0.09 2.49 6.42 -52.48 -0.34 2.15 16 9 C 0.56 14.84 7.21 -12.99 -0.09 14.75 16 10 O -0.62 -18.07 12.12 5.20 0.06 -18.00 16 11 N -0.63 -13.63 2.97 -174.43 -0.52 -14.14 16 12 C 0.12 2.18 6.43 -3.71 -0.02 2.16 16 13 C -0.13 -1.94 5.28 -26.45 -0.14 -2.08 16 14 C -0.12 -1.53 2.48 -90.42 -0.22 -1.76 16 15 C 0.07 0.73 6.96 37.16 0.26 0.99 16 16 F -0.22 -2.95 16.82 2.25 0.04 -2.91 16 17 C -0.13 -1.76 5.36 -26.61 -0.14 -1.91 16 18 C 0.12 2.14 6.28 -3.71 -0.02 2.11 16 19 H 0.28 7.34 8.29 -40.82 -0.34 7.00 16 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.09 1.77 6.99 -51.93 -0.36 1.41 16 22 H 0.07 0.96 7.78 -51.93 -0.40 0.56 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.93 5.60 -51.93 -0.29 1.64 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 247.51 15.07 3.73 3.73 Total: -1.00 -31.63 247.51 -5.04 -36.67 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -3.93 Total: -5.55 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.81 Total: 1.81 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.25 Total: -36.81 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.06 Total: -18.00 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.39 Total: 21.06 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.63 -5.04 -36.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409425788.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.068 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds