Wall clock time and date at job start Mon Mar 30 2020 02:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00170 * 2 1 4 4 H 1.08994 * 110.64465 * 26.86129 * 3 2 1 5 5 C 1.54338 * 111.00360 * 263.77836 * 3 2 1 6 6 N 1.47019 * 107.26787 * 219.60561 * 5 3 2 7 7 C 1.34774 * 125.64850 * 178.85086 * 6 5 3 8 8 O 1.21691 * 119.99707 * 359.71833 * 7 6 5 9 9 C 1.46374 * 119.99951 * 179.71267 * 7 6 5 10 10 H 1.07991 * 120.00335 * 0.02562 * 9 7 6 11 11 C 1.40055 * 119.99881 * 180.02562 * 9 7 6 12 12 N 1.30678 * 119.99845 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 120.00205 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47341 * 180.02562 * 13 11 9 15 15 H 1.48510 * 109.46748 * 300.00101 * 13 11 9 16 16 H 1.48498 * 109.47206 * 59.99778 * 13 11 9 17 17 C 1.47426 * 108.70508 * 358.58386 * 6 5 3 18 18 C 1.54909 * 104.83034 * 24.35787 * 17 6 5 19 19 H 1.09000 * 111.01178 * 204.87729 * 18 17 6 20 20 O 1.42901 * 111.00540 * 81.06126 * 18 17 6 21 21 H 1.08998 * 109.46864 * 59.99342 * 1 2 3 22 22 H 1.09001 * 109.47504 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46749 * 300.00096 * 1 2 3 24 24 H 1.08998 * 109.98500 * 100.12589 * 5 3 2 25 25 H 1.08999 * 109.77710 * 338.96481 * 5 3 2 26 26 H 0.97001 * 119.99601 * 179.97438 * 12 11 9 27 27 H 1.08996 * 110.36588 * 143.18929 * 17 6 5 28 28 H 1.08999 * 110.36670 * 265.52251 * 17 6 5 29 29 H 0.96704 * 114.00044 * 61.45289 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3354 2.0265 0.4608 5 6 2.3779 1.7472 -1.4323 6 7 3.6671 2.4498 -1.3550 7 6 4.3411 2.9718 -2.3988 8 8 3.8886 2.8759 -3.5244 9 6 5.6172 3.6541 -2.1786 10 1 6.0188 3.7389 -1.1798 11 6 6.3173 4.1970 -3.2633 12 7 5.8315 4.0939 -4.4721 13 14 7.9461 5.0671 -2.9825 14 1 8.4808 5.5484 -4.2816 15 1 7.7393 6.2236 -2.0739 16 1 8.9129 4.1219 -2.3684 17 6 4.0973 2.4945 0.0544 18 6 3.3818 1.2956 0.7256 19 1 3.2594 1.4628 1.7957 20 8 4.0838 0.0759 0.4775 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6129 2.4180 -1.8232 25 1 2.4706 0.8723 -2.0758 26 1 6.3162 4.4702 -5.2233 27 1 5.1788 2.3784 0.1247 28 1 3.7843 3.4304 0.5171 29 1 4.9846 0.0620 0.8289 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409426333.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:02 Heat of formation + Delta-G solvation = -120.108859 kcal Electronic energy + Delta-G solvation = -14845.748275 eV Core-core repulsion = 12155.530708 eV Total energy + Delta-G solvation = -2690.217566 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.22747 -37.00254 -36.11936 -34.10533 -32.47074 -29.53087 -27.94756 -26.65034 -25.67065 -22.54285 -20.71580 -19.20186 -17.52897 -16.83272 -15.68074 -15.62096 -14.97685 -14.91813 -14.50063 -13.96319 -13.65382 -13.21072 -12.60866 -12.24048 -11.82481 -11.50757 -11.40008 -11.15799 -11.01621 -10.98099 -10.64844 -10.34172 -10.20428 -9.80992 -9.33065 -8.86204 -7.65310 -7.20987 -6.21402 -4.66816 3.14078 3.18731 3.20762 3.80125 4.08765 4.38986 4.53852 4.59781 4.89308 5.01402 5.25970 5.41425 5.46788 5.54219 5.70828 5.76273 5.87617 6.15900 6.22647 6.46671 6.51885 7.30786 7.37264 7.41052 7.97755 8.07220 8.37247 8.99257 9.45913 10.56080 10.74700 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.052640 B = 0.008087 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.783685 B = 3461.668602 C = 3811.909707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.083 3.917 4 H 0.081 0.919 5 C 0.101 3.899 6 N -0.637 5.637 7 C 0.572 3.428 8 O -0.574 6.574 9 C -0.539 4.539 10 H 0.069 0.931 11 C 0.086 3.914 12 N -0.767 5.767 13 Si 0.910 3.090 14 H -0.280 1.280 15 H -0.268 1.268 16 H -0.267 1.267 17 C 0.088 3.912 18 C 0.092 3.908 19 H 0.070 0.930 20 O -0.540 6.540 21 H 0.042 0.958 22 H 0.083 0.917 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.270 0.730 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -3.169 11.719 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.278 6.278 3 C 0.024 3.976 4 H 0.099 0.901 5 C -0.023 4.023 6 N -0.378 5.378 7 C 0.379 3.621 8 O -0.456 6.456 9 C -0.576 4.576 10 H 0.087 0.913 11 C -0.133 4.133 12 N -0.396 5.396 13 Si 0.735 3.265 14 H -0.205 1.205 15 H -0.193 1.193 16 H -0.192 1.192 17 C -0.037 4.037 18 C 0.032 3.968 19 H 0.088 0.912 20 O -0.344 6.344 21 H 0.060 0.940 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.297 -3.478 10.491 12.257 hybrid contribution 1.051 0.883 0.487 1.456 sum -4.246 -2.595 10.979 12.054 Atomic orbital electron populations 1.22827 0.81902 1.02535 0.99784 1.88071 1.18713 1.26312 1.94751 1.23313 0.93011 0.85119 0.96170 0.90084 1.21915 0.88315 0.96904 0.95216 1.48546 1.21438 1.61633 1.06203 1.18060 0.84532 0.78032 0.81519 1.90616 1.70188 1.62744 1.22067 1.20813 1.04232 1.38068 0.94484 0.91320 1.25738 0.98457 0.94617 0.94532 1.70015 1.36172 1.34236 0.99177 0.86399 0.81960 0.79977 0.78212 1.20495 1.19267 1.19224 1.22651 1.00143 0.96124 0.84801 1.23142 0.91444 0.85427 0.96828 0.91240 1.86609 1.30128 1.35287 1.82407 0.93963 0.89800 0.94357 0.93222 0.91896 0.91947 0.90268 0.92456 0.77944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 101.05 1.10 1.41 15 2 O -0.36 -5.99 10.00 -52.34 -0.52 -6.51 15 3 C 0.08 1.36 3.31 -24.88 -0.08 1.28 15 4 H 0.08 1.10 7.82 -51.93 -0.41 0.69 15 5 C 0.10 2.14 6.66 -3.06 -0.02 2.12 15 6 N -0.64 -15.26 3.33 -172.17 -0.57 -15.84 15 7 C 0.57 16.96 7.78 -12.99 -0.10 16.86 15 8 O -0.57 -19.41 15.35 5.20 0.08 -19.33 15 9 C -0.54 -15.37 8.98 -35.63 -0.32 -15.69 15 10 H 0.07 1.77 6.64 -52.49 -0.35 1.42 15 11 C 0.09 2.43 5.50 -17.36 -0.10 2.33 15 12 N -0.77 -23.29 11.83 55.55 0.66 -22.64 15 13 Si 0.91 20.10 29.56 -169.99 -5.02 15.08 15 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 15 H -0.27 -5.72 7.11 56.52 0.40 -5.31 15 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 17 C 0.09 1.60 6.25 -2.53 -0.02 1.59 15 18 C 0.09 1.43 4.30 -24.58 -0.11 1.32 15 19 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 20 O -0.54 -9.06 13.03 -52.34 -0.68 -9.74 15 21 H 0.04 0.49 8.14 -51.93 -0.42 0.07 15 22 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 23 H 0.04 0.38 8.11 -51.93 -0.42 -0.04 15 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.06 1.49 8.06 -51.93 -0.42 1.07 15 26 H 0.27 7.41 8.29 -40.82 -0.34 7.07 15 27 H 0.08 1.43 7.14 -51.93 -0.37 1.06 15 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 29 H 0.37 4.55 9.11 45.56 0.42 4.96 15 LS Contribution 253.93 15.07 3.83 3.83 Total: -1.00 -37.24 253.93 -4.68 -41.92 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -2.80 Total: 2.01 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 0.36 Total: 11.23 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.08 Total: -38.47 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.13 Total: -35.59 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -37.24 -4.68 -41.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409426333.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.191 kcal (2) G-P(sol) polarization free energy of solvation -37.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds