Wall clock time and date at job start Mon Mar 30 2020 02:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47344 * 2 1 4 4 C 1.38357 * 119.82706 * 89.99791 * 3 2 1 5 5 C 1.50704 * 119.79059 * 0.25600 * 4 3 2 6 6 C 1.37708 * 120.41781 * 179.97438 * 4 3 2 7 7 C 1.40802 * 120.05335 * 359.97438 * 6 4 3 8 8 C 1.41439 * 120.17263 * 180.02562 * 7 6 4 9 9 H 1.07996 * 120.00016 * 24.47687 * 8 7 6 10 10 C 1.39935 * 119.99557 * 204.48297 * 8 7 6 11 11 N 1.30824 * 120.00320 * 17.89567 * 10 8 7 12 12 Si 1.86805 * 119.99693 * 197.89649 * 10 8 7 13 13 H 1.48501 * 109.47106 * 59.99657 * 12 10 8 14 14 H 1.48495 * 109.47016 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47041 * 300.00050 * 12 10 8 16 16 C 1.40467 * 119.64998 * 0.02562 * 7 6 4 17 17 C 1.39084 * 119.58948 * 359.97438 * 16 7 6 18 18 C 1.43197 * 120.02927 * 180.02562 * 17 16 7 19 19 N 3.55417 * 94.93325 * 284.06655 * 2 1 3 20 20 H 1.09003 * 109.46976 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46746 * 299.99878 * 1 2 3 22 22 H 1.08992 * 109.47284 * 60.00035 * 1 2 3 23 23 H 1.09007 * 109.46808 * 239.99476 * 2 1 3 24 24 H 1.09003 * 109.46868 * 120.00089 * 2 1 3 25 25 H 1.08995 * 109.47369 * 269.72417 * 5 4 3 26 26 H 1.09006 * 109.46964 * 29.72818 * 5 4 3 27 27 H 1.09005 * 109.46843 * 149.72167 * 5 4 3 28 28 H 1.08003 * 119.97357 * 180.02562 * 6 4 3 29 29 H 0.97002 * 119.99928 * 179.97438 * 11 10 8 30 30 H 1.08000 * 120.20364 * 179.97438 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2618 2.0696 1.2003 5 6 2.0132 1.3491 2.5004 6 6 2.7213 3.3676 1.2145 7 6 2.9617 4.0439 0.0031 8 6 3.4342 5.3770 0.0147 9 1 3.9771 5.7500 0.8706 10 6 3.1980 6.2125 -1.0827 11 7 2.2677 5.9062 -1.9499 12 14 4.2114 7.7653 -1.3093 13 1 5.6468 7.4058 -1.4343 14 1 3.7683 8.4705 -2.5387 15 1 4.0243 8.6544 -0.1346 16 6 2.7296 3.3876 -1.2170 17 6 2.2655 2.0765 -1.2141 18 6 2.0263 1.3983 -2.4524 19 7 1.8357 0.8606 -3.4348 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5140 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 0.9845 1.5182 2.8186 26 1 2.1796 0.2808 2.3613 27 1 2.6958 1.7270 3.2615 28 1 2.8983 3.8671 2.1556 29 1 2.1038 6.4856 -2.7103 30 1 2.9106 3.8980 -2.1514 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:04 Heat of formation + Delta-G solvation = 9.699682 kcal Electronic energy + Delta-G solvation = -13618.316503 eV Core-core repulsion = 11376.869872 eV Total energy + Delta-G solvation = -2241.446631 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23006 -37.41396 -36.29092 -34.10498 -33.03929 -31.01172 -27.55882 -27.08979 -24.54386 -23.41663 -21.28893 -19.25237 -18.09378 -17.07603 -16.37489 -16.18484 -15.08647 -14.87493 -14.43067 -14.30874 -14.15450 -13.86119 -13.69628 -13.51844 -13.25590 -13.00090 -12.88992 -12.59756 -12.42151 -12.03904 -11.94142 -11.83214 -11.44019 -11.20092 -10.95381 -9.36253 -9.09397 -8.64824 -6.32828 0.32041 0.98484 1.41505 1.49896 1.53603 1.74242 2.16986 2.22833 2.79656 3.21902 3.65912 4.18238 4.22483 4.47767 4.62387 4.62854 4.86207 4.89938 5.00042 5.06827 5.13671 5.20014 5.23744 5.33125 5.39799 5.51782 5.55165 5.83824 6.07291 6.08749 6.30014 6.49030 6.68309 6.91791 6.94475 8.31884 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033112 B = 0.009516 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.420583 B = 2941.708860 C = 3600.867089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.152 4.152 4 C -0.059 4.059 5 C -0.104 4.104 6 C -0.200 4.200 7 C 0.078 3.922 8 C -0.491 4.491 9 H 0.086 0.914 10 C 0.035 3.965 11 N -0.828 5.828 12 Si 0.977 3.023 13 H -0.261 1.261 14 H -0.275 1.275 15 H -0.256 1.256 16 C -0.137 4.137 17 C -0.034 4.034 18 C 0.291 3.709 19 N -0.486 5.486 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.025 0.975 23 H 0.043 0.957 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.287 0.713 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.006 -4.045 6.897 7.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 C -0.156 4.156 4 C -0.059 4.059 5 C -0.160 4.160 6 C -0.220 4.220 7 C 0.075 3.925 8 C -0.520 4.520 9 H 0.104 0.896 10 C -0.179 4.179 11 N -0.454 5.454 12 Si 0.799 3.201 13 H -0.185 1.185 14 H -0.199 1.199 15 H -0.180 1.180 16 C -0.159 4.159 17 C -0.038 4.038 18 C -0.022 4.022 19 N -0.163 5.163 20 H 0.090 0.910 21 H 0.083 0.917 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.114 0.886 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.098 0.902 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.423 -4.795 5.164 7.060 hybrid contribution 0.381 1.293 -0.363 1.396 sum -0.043 -3.502 4.800 5.942 Atomic orbital electron populations 1.21699 0.94904 1.01779 1.01242 1.20414 0.96169 0.91999 1.02163 1.19335 1.08757 0.97129 0.90382 1.19541 0.97849 0.93714 0.94840 1.20821 1.02258 1.00232 0.92732 1.21300 1.07990 0.95786 0.96933 1.17754 0.90127 0.93486 0.91107 1.19819 1.32875 0.96099 1.03250 0.89605 1.26734 0.94188 1.02902 0.94124 1.69850 1.25234 1.38605 1.11737 0.85306 0.79204 0.76916 0.78715 1.18494 1.19934 1.17951 1.21295 1.03926 0.91608 0.99113 1.16014 1.07596 0.93893 0.86266 1.26274 0.91616 0.91504 0.92762 1.81037 1.11973 1.11480 1.11798 0.90990 0.91721 0.95533 0.93860 0.88588 0.90790 0.90127 0.91202 0.86938 0.90222 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.90 71.98 0.71 -3.24 16 2 C -0.07 -2.19 5.24 29.85 0.16 -2.03 16 3 C -0.15 -5.91 5.19 -19.42 -0.10 -6.01 16 4 C -0.06 -2.20 5.87 -19.96 -0.12 -2.32 16 5 C -0.10 -2.75 9.59 71.24 0.68 -2.07 16 6 C -0.20 -8.58 9.42 22.77 0.21 -8.37 16 7 C 0.08 3.86 5.57 -21.32 -0.12 3.74 16 8 C -0.49 -24.63 9.05 23.47 0.21 -24.42 16 9 H 0.09 4.06 7.91 -2.91 -0.02 4.04 16 10 C 0.04 1.71 5.14 85.25 0.44 2.15 16 11 N -0.83 -42.44 10.96 21.82 0.24 -42.20 16 12 Si 0.98 36.86 29.60 68.60 2.03 38.89 16 13 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 14 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 15 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 16 C -0.14 -6.91 8.40 23.02 0.19 -6.72 16 17 C -0.03 -1.53 5.72 -21.42 -0.12 -1.66 16 18 C 0.29 13.01 13.76 88.33 1.22 14.22 16 19 N -0.49 -21.88 18.54 19.00 0.35 -21.53 16 20 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.04 1.42 7.06 -2.38 -0.02 1.40 16 24 H 0.10 2.42 5.90 -2.39 -0.01 2.41 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 1.81 5.90 -2.38 -0.01 1.79 16 27 H 0.07 1.68 8.08 -2.38 -0.02 1.66 16 28 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 29 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 30 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 Total: -1.00 -55.45 263.18 7.13 -48.32 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.15 Total: 13.24 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 3.37 Total: -36.72 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: 0.59 Total: -63.73 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Total: -55.45 7.13 -48.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.015 kcal (2) G-P(sol) polarization free energy of solvation -55.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds