Wall clock time and date at job start Mon Mar 30 2020 02:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47860 * 2 1 4 4 C 1.38719 * 119.33470 * 89.99176 * 3 2 1 5 5 C 1.38025 * 121.29167 * 180.02562 * 4 3 2 6 6 C 1.50697 * 120.04282 * 179.97438 * 5 4 3 7 7 C 1.39512 * 119.91462 * 359.97438 * 5 4 3 8 8 C 1.43200 * 120.63276 * 179.72584 * 7 5 4 9 9 N 6.87122 * 109.38762 * 1.12387 * 2 1 3 10 10 C 1.46511 * 118.73553 * 359.97438 * 7 5 4 11 11 C 1.40789 * 120.61739 * 179.97438 * 10 7 5 12 12 H 1.07996 * 119.99966 * 330.16963 * 11 10 7 13 13 C 1.40254 * 119.99863 * 150.17044 * 11 10 7 14 14 N 1.30653 * 119.99876 * 161.89745 * 13 11 10 15 15 Si 1.86803 * 120.00102 * 341.89745 * 13 11 10 16 16 H 1.48500 * 109.47038 * 95.38890 * 15 13 11 17 17 H 1.48497 * 109.47215 * 215.39410 * 15 13 11 18 18 H 1.48506 * 109.47056 * 335.39241 * 15 13 11 19 19 C 1.36425 * 119.33198 * 269.97795 * 3 2 1 20 20 H 1.09006 * 109.46622 * 59.99966 * 1 2 3 21 21 H 1.08990 * 109.47387 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47271 * 300.00838 * 1 2 3 23 23 H 1.09003 * 109.47089 * 239.99604 * 2 1 3 24 24 H 1.09008 * 109.47128 * 120.00139 * 2 1 3 25 25 H 1.08000 * 119.35122 * 359.97438 * 4 3 2 26 26 H 1.08996 * 109.47465 * 270.03158 * 6 5 4 27 27 H 1.08999 * 109.46875 * 30.02960 * 6 5 4 28 28 H 1.09000 * 109.46977 * 150.02760 * 6 5 4 29 29 H 0.97003 * 119.99812 * 179.97438 * 14 13 11 30 30 H 1.08007 * 120.01852 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2589 2.0615 1.2093 5 6 2.7184 3.3621 1.2564 6 6 2.9543 4.0312 2.5860 7 6 2.9642 4.0566 0.0717 8 6 3.4355 5.4084 0.1026 9 7 3.8109 6.4803 0.1271 10 6 2.7257 3.3782 -1.2049 11 6 2.9600 4.0418 -2.4242 12 1 2.8445 5.1137 -2.4866 13 6 3.3434 3.3106 -3.5581 14 7 3.2210 3.8376 -4.7473 15 14 4.0291 1.5834 -3.3678 16 1 2.9360 0.5944 -3.5467 17 1 5.0788 1.3519 -4.3924 18 1 4.6177 1.4310 -2.0129 19 6 2.2558 2.0506 -1.1893 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.0712 1.5325 2.1320 26 1 2.0421 4.5344 2.9064 27 1 3.2344 3.2812 3.3255 28 1 3.7570 4.7620 2.4876 29 1 3.4866 3.3320 -5.5315 30 1 2.0729 1.5312 -2.1185 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646994.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:34 Heat of formation + Delta-G solvation = 3.901325 kcal Electronic energy + Delta-G solvation = -13683.861170 eV Core-core repulsion = 11442.163103 eV Total energy + Delta-G solvation = -2241.698067 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09170 -37.26305 -36.01058 -34.96612 -33.30097 -30.55514 -28.32579 -27.12851 -24.92062 -22.51050 -21.57134 -19.16797 -19.08507 -17.10673 -16.47342 -15.60178 -15.25380 -14.99763 -14.70519 -14.45925 -14.06115 -13.80781 -13.77101 -13.67272 -13.38482 -13.26367 -12.88436 -12.67388 -12.58289 -12.18980 -11.78113 -11.72308 -11.52865 -11.42955 -10.98470 -9.43795 -9.22587 -9.06661 -6.66926 0.24078 0.83100 1.25591 1.39896 1.50036 1.99275 2.06959 2.28186 2.58303 3.43331 3.56505 4.04946 4.11341 4.33655 4.53663 4.66804 4.73946 4.81002 4.86070 4.89800 4.95097 5.06682 5.16429 5.21125 5.33658 5.46961 5.54911 5.73711 5.81460 5.99966 6.09420 6.27601 6.53917 6.65966 6.91533 8.00053 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.015885 C = 0.009584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.985708 B = 1762.192627 C = 2920.793355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.008 4.008 4 C -0.229 4.229 5 C 0.011 3.989 6 C -0.113 4.113 7 C -0.203 4.203 8 C 0.305 3.695 9 N -0.529 5.529 10 C 0.122 3.878 11 C -0.463 4.463 12 H 0.048 0.952 13 C 0.049 3.951 14 N -0.825 5.825 15 Si 0.966 3.034 16 H -0.240 1.240 17 H -0.276 1.276 18 H -0.244 1.244 19 C -0.250 4.250 20 H 0.040 0.960 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.143 0.857 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.044 0.956 29 H 0.302 0.698 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 -12.233 8.412 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.009 4.009 4 C -0.248 4.248 5 C 0.008 3.992 6 C -0.169 4.169 7 C -0.209 4.209 8 C -0.004 4.004 9 N -0.208 5.208 10 C 0.117 3.883 11 C -0.491 4.491 12 H 0.066 0.934 13 C -0.170 4.170 14 N -0.448 5.448 15 Si 0.787 3.213 16 H -0.164 1.164 17 H -0.203 1.203 18 H -0.167 1.167 19 C -0.269 4.269 20 H 0.059 0.941 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.161 0.839 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.371 -10.497 8.149 13.499 hybrid contribution 0.184 0.011 -0.898 0.916 sum -2.187 -10.486 7.252 12.935 Atomic orbital electron populations 1.21696 0.93855 1.02421 1.01848 1.20713 0.96996 0.91523 1.03424 1.19705 0.92590 0.96098 0.92486 1.20410 1.12349 0.94535 0.97509 1.19851 0.92594 0.93933 0.92791 1.20867 1.01822 1.00688 0.93552 1.17115 1.20989 0.88132 0.94615 1.25987 0.91125 0.92781 0.90537 1.80994 1.15464 1.13528 1.10844 1.18634 0.87329 0.91987 0.90338 1.19506 1.40642 0.95520 0.93470 0.93416 1.27113 0.92233 1.04393 0.93238 1.69628 1.33347 1.41487 1.00382 0.85481 0.79360 0.76345 0.80136 1.16416 1.20263 1.16669 1.20644 1.12514 0.95906 0.97876 0.94105 0.90496 0.92085 0.91573 0.88790 0.83919 0.90144 0.88335 0.93720 0.88693 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.90 71.98 0.71 -2.48 16 2 C -0.09 -2.29 6.02 29.85 0.18 -2.11 16 3 C -0.01 -0.27 5.09 -20.17 -0.10 -0.38 16 4 C -0.23 -7.45 9.26 22.33 0.21 -7.24 16 5 C 0.01 0.40 5.91 -19.61 -0.12 0.29 16 6 C -0.11 -3.27 9.62 71.23 0.69 -2.59 16 7 C -0.20 -9.30 5.94 -19.57 -0.12 -9.42 16 8 C 0.30 14.93 12.89 88.33 1.14 16.07 16 9 N -0.53 -26.84 18.54 19.00 0.35 -26.48 16 10 C 0.12 6.00 5.27 -19.86 -0.10 5.90 16 11 C -0.46 -25.61 9.04 23.38 0.21 -25.40 16 12 H 0.05 2.98 7.66 -2.91 -0.02 2.95 16 13 C 0.05 2.52 5.41 85.36 0.46 2.98 16 14 N -0.82 -43.63 13.92 21.88 0.30 -43.33 16 15 Si 0.97 39.42 24.53 68.60 1.68 41.10 16 16 H -0.24 -8.78 6.72 99.48 0.67 -8.11 16 17 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.24 -10.06 6.86 99.48 0.68 -9.38 16 19 C -0.25 -10.61 6.74 22.48 0.15 -10.46 16 20 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 21 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 24 H 0.09 1.92 8.07 -2.38 -0.02 1.90 16 25 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.10 2.18 8.09 -2.39 -0.02 2.16 16 28 H 0.04 1.42 7.12 -2.39 -0.02 1.41 16 29 H 0.30 14.08 8.29 -92.71 -0.77 13.31 16 30 H 0.11 4.47 4.76 -2.91 -0.01 4.45 16 Total: -1.00 -60.62 261.43 6.72 -53.89 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.08 Total: 9.67 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 3.31 Total: -34.85 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: 0.66 Total: -69.81 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.68 Total: 41.10 kcal Total: -60.62 6.72 -53.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646994.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.792 kcal (2) G-P(sol) polarization free energy of solvation -60.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds