Wall clock time and date at job start Mon Mar 30 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47149 * 2 1 4 4 C 1.39085 * 120.20664 * 90.00380 * 3 2 1 5 5 C 1.43201 * 120.02913 * 359.97438 * 4 3 2 6 6 N 3.55559 * 95.00048 * 75.63276 * 2 1 3 7 7 C 1.39940 * 119.94086 * 180.02562 * 4 3 2 8 8 C 1.38358 * 120.35021 * 359.97000 * 7 4 3 9 9 C 1.50704 * 119.79247 * 180.02562 * 8 7 4 10 10 C 1.37722 * 120.41751 * 0.02562 * 8 7 4 11 11 C 1.40467 * 120.20613 * 269.98072 * 3 2 1 12 12 C 1.41433 * 120.17035 * 359.97438 * 11 3 2 13 13 H 1.08000 * 120.00768 * 25.45989 * 12 11 3 14 14 C 1.39938 * 119.99998 * 205.45796 * 12 11 3 15 15 N 1.30833 * 119.99533 * 15.33937 * 14 12 11 16 16 Si 1.86798 * 120.00195 * 195.33959 * 14 12 11 17 17 H 1.48499 * 109.46994 * 94.96750 * 16 14 12 18 18 H 1.48497 * 109.46870 * 214.96569 * 16 14 12 19 19 H 1.48492 * 109.47113 * 334.96706 * 16 14 12 20 20 H 1.09000 * 109.47443 * 59.99665 * 1 2 3 21 21 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46917 * 300.00161 * 1 2 3 23 23 H 1.09002 * 109.47109 * 240.00354 * 2 1 3 24 24 H 1.09000 * 109.47443 * 120.00335 * 2 1 3 25 25 H 1.08006 * 119.82711 * 180.02562 * 7 4 3 26 26 H 1.09004 * 109.46823 * 269.97980 * 9 8 7 27 27 H 1.08998 * 109.46827 * 29.98113 * 9 8 7 28 28 H 1.08996 * 109.46976 * 149.98215 * 9 8 7 29 29 H 1.07998 * 119.97155 * 179.74240 * 10 8 7 30 30 H 0.97002 * 119.99375 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2657 2.0805 1.2020 5 6 2.0282 1.4105 2.4451 6 7 1.8399 0.8789 3.4313 7 6 2.7316 3.4001 1.1955 8 6 2.9628 4.0540 -0.0017 9 6 3.4651 5.4748 0.0060 10 6 2.7368 3.4146 -1.2004 11 6 2.2683 2.0870 -1.2139 12 6 2.0361 1.4275 -2.4434 13 1 1.3238 0.6175 -2.4958 14 6 2.7295 1.8247 -3.5922 15 7 3.7912 2.5819 -3.4864 16 14 2.1393 1.2736 -5.2767 17 1 1.2722 2.3254 -5.8658 18 1 3.3102 1.0448 -6.1609 19 1 1.3665 0.0128 -5.1424 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.9126 3.9105 2.1300 26 1 2.6173 6.1599 0.0075 27 1 4.0689 5.6418 0.8980 28 1 4.0725 5.6502 -0.8819 29 1 2.9157 3.9332 -2.1306 30 1 4.2720 2.8569 -4.2827 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575647760.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:59 Heat of formation + Delta-G solvation = 19.129216 kcal Electronic energy + Delta-G solvation = -13712.497556 eV Core-core repulsion = 11471.459820 eV Total energy + Delta-G solvation = -2241.037736 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.47711 -35.72865 -34.05878 -33.47508 -30.27903 -29.90632 -25.93624 -25.46388 -22.83547 -21.72376 -19.72132 -17.55376 -16.09124 -15.42923 -14.66602 -14.53786 -13.39355 -13.25841 -12.88440 -12.65664 -12.58036 -12.47028 -12.13030 -11.85279 -11.51554 -11.45374 -11.22876 -11.11457 -10.80680 -10.59006 -10.36317 -10.16817 -9.78409 -9.42033 -9.28407 -7.57501 -7.36753 -6.86769 -4.50842 2.08573 2.60916 3.01848 3.05267 3.05771 3.45256 3.84236 3.95128 4.55257 4.91200 5.39815 5.78188 5.85782 6.01657 6.03161 6.20073 6.26543 6.32951 6.48960 6.54124 6.63271 6.69220 6.88445 6.99864 7.07550 7.14859 7.31728 7.59456 7.76108 7.86890 8.00035 8.31177 8.42487 8.72373 8.75053 10.06550 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.011535 C = 0.008421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.190293 B = 2426.839145 C = 3324.204958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.019 4.019 5 C 0.284 3.716 6 N -0.478 5.478 7 C -0.185 4.185 8 C -0.084 4.084 9 C -0.102 4.102 10 C -0.130 4.130 11 C 0.110 3.890 12 C -0.453 4.453 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.792 5.792 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.261 1.261 20 H 0.060 0.940 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.127 0.873 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 1.667 -1.308 2.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C -0.143 4.143 4 C -0.023 4.023 5 C -0.029 4.029 6 N -0.155 5.155 7 C -0.207 4.207 8 C -0.084 4.084 9 C -0.159 4.159 10 C -0.150 4.150 11 C 0.108 3.892 12 C -0.483 4.483 13 H 0.103 0.897 14 C -0.143 4.143 15 N -0.417 5.417 16 Si 0.733 3.267 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.185 1.185 20 H 0.079 0.921 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.644 0.942 0.073 1.896 hybrid contribution -0.015 0.030 -1.151 1.152 sum -1.659 0.971 -1.078 2.204 Atomic orbital electron populations 1.21707 0.96355 1.00070 1.01682 1.20240 0.94889 0.94140 1.01277 1.19762 1.08059 0.95219 0.91293 1.15675 1.07209 0.93995 0.85372 1.26309 0.91862 0.91976 0.92741 1.81070 1.11730 1.10494 1.12181 1.20180 1.10197 0.93619 0.96658 1.19401 1.00574 0.95189 0.93255 1.20649 0.99904 0.93989 1.01374 1.21468 1.02800 0.94457 0.96318 1.17323 0.89583 0.91079 0.91241 1.19605 1.20784 1.15940 0.91934 0.89728 1.25915 0.93330 0.93583 1.01469 1.69791 1.12531 1.27592 1.31810 0.86279 0.79298 0.80167 0.80968 1.19316 1.20263 1.18468 0.92091 0.93887 0.93840 0.90512 0.93732 0.88483 0.92667 0.92991 0.92215 0.85541 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.88 37.16 0.37 -2.15 16 2 C -0.07 -1.36 5.05 -27.88 -0.14 -1.50 16 3 C -0.14 -3.10 5.23 -103.47 -0.54 -3.64 16 4 C -0.02 -0.41 5.72 -107.02 -0.61 -1.02 16 5 C 0.28 5.97 13.78 -22.47 -0.31 5.66 16 6 N -0.48 -10.23 18.54 41.84 0.78 -9.46 16 7 C -0.18 -3.81 9.40 -38.90 -0.37 -4.18 16 8 C -0.08 -1.74 5.87 -104.76 -0.61 -2.36 16 9 C -0.10 -1.72 10.00 36.01 0.36 -1.36 16 10 C -0.13 -3.02 8.31 -38.81 -0.32 -3.34 16 11 C 0.11 2.63 5.57 -106.88 -0.60 2.03 16 12 C -0.45 -10.73 8.14 -37.73 -0.31 -11.03 16 13 H 0.08 1.92 6.58 -52.49 -0.35 1.58 16 14 C 0.08 1.71 5.18 -17.34 -0.09 1.62 16 15 N -0.79 -18.66 10.87 55.55 0.60 -18.06 16 16 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 17 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 19 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 20 H 0.06 1.10 7.88 -51.93 -0.41 0.69 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 1.55 6.77 -51.93 -0.35 1.19 16 24 H 0.04 0.88 7.08 -51.93 -0.37 0.51 16 25 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 29 H 0.13 3.02 6.13 -52.49 -0.32 2.70 16 30 H 0.28 6.07 8.30 -40.82 -0.34 5.74 16 LS Contribution 263.83 15.07 3.98 3.98 Total: -1.00 -24.54 263.83 -6.31 -30.85 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.46 Total: 1.70 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.17 Total: -21.28 kcal Atomic # 7 Polarization: -28.89 SS G_CDS: 1.38 Total: -27.51 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -24.54 -6.31 -30.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647760.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.976 kcal (2) G-P(sol) polarization free energy of solvation -24.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds