Wall clock time and date at job start Mon Mar 30 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47149 * 2 1 4 4 C 1.39085 * 120.20664 * 90.00380 * 3 2 1 5 5 C 1.43201 * 120.02913 * 359.97438 * 4 3 2 6 6 N 3.55559 * 95.00048 * 75.63276 * 2 1 3 7 7 C 1.39940 * 119.94086 * 180.02562 * 4 3 2 8 8 C 1.38358 * 120.35021 * 359.97000 * 7 4 3 9 9 C 1.50704 * 119.79247 * 180.02562 * 8 7 4 10 10 C 1.37722 * 120.41751 * 0.02562 * 8 7 4 11 11 C 1.40467 * 120.20613 * 269.98072 * 3 2 1 12 12 C 1.41433 * 120.17035 * 359.97438 * 11 3 2 13 13 H 1.08000 * 120.00768 * 25.45989 * 12 11 3 14 14 C 1.39938 * 119.99998 * 205.45796 * 12 11 3 15 15 N 1.30833 * 119.99533 * 15.33937 * 14 12 11 16 16 Si 1.86798 * 120.00195 * 195.33959 * 14 12 11 17 17 H 1.48499 * 109.46994 * 94.96750 * 16 14 12 18 18 H 1.48497 * 109.46870 * 214.96569 * 16 14 12 19 19 H 1.48492 * 109.47113 * 334.96706 * 16 14 12 20 20 H 1.09000 * 109.47443 * 59.99665 * 1 2 3 21 21 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46917 * 300.00161 * 1 2 3 23 23 H 1.09002 * 109.47109 * 240.00354 * 2 1 3 24 24 H 1.09000 * 109.47443 * 120.00335 * 2 1 3 25 25 H 1.08006 * 119.82711 * 180.02562 * 7 4 3 26 26 H 1.09004 * 109.46823 * 269.97980 * 9 8 7 27 27 H 1.08998 * 109.46827 * 29.98113 * 9 8 7 28 28 H 1.08996 * 109.46976 * 149.98215 * 9 8 7 29 29 H 1.07998 * 119.97155 * 179.74240 * 10 8 7 30 30 H 0.97002 * 119.99375 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2657 2.0805 1.2020 5 6 2.0282 1.4105 2.4451 6 7 1.8399 0.8789 3.4313 7 6 2.7316 3.4001 1.1955 8 6 2.9628 4.0540 -0.0017 9 6 3.4651 5.4748 0.0060 10 6 2.7368 3.4146 -1.2004 11 6 2.2683 2.0870 -1.2139 12 6 2.0361 1.4275 -2.4434 13 1 1.3238 0.6175 -2.4958 14 6 2.7295 1.8247 -3.5922 15 7 3.7912 2.5819 -3.4864 16 14 2.1393 1.2736 -5.2767 17 1 1.2722 2.3254 -5.8658 18 1 3.3102 1.0448 -6.1609 19 1 1.3665 0.0128 -5.1424 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.9126 3.9105 2.1300 26 1 2.6173 6.1599 0.0075 27 1 4.0689 5.6418 0.8980 28 1 4.0725 5.6502 -0.8819 29 1 2.9157 3.9332 -2.1306 30 1 4.2720 2.8569 -4.2827 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575647760.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:59 Heat of formation + Delta-G solvation = 9.158403 kcal Electronic energy + Delta-G solvation = -13712.929922 eV Core-core repulsion = 11471.459820 eV Total energy + Delta-G solvation = -2241.470103 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15703 -37.42596 -35.70938 -35.11783 -31.86070 -31.57783 -27.53491 -27.09249 -24.48417 -23.34728 -21.40195 -19.23040 -17.80633 -17.08034 -16.32096 -16.17416 -15.01118 -14.88603 -14.42436 -14.20429 -14.11801 -14.02172 -13.78692 -13.44075 -13.10390 -12.98242 -12.76902 -12.64908 -12.40332 -12.13743 -11.92818 -11.77508 -11.43431 -11.06518 -10.97481 -9.31859 -9.03310 -8.56266 -6.28437 0.36814 0.95366 1.46138 1.52562 1.57192 1.76220 2.23394 2.27724 2.84987 3.21043 3.68253 4.23476 4.28850 4.49266 4.62713 4.68452 4.75755 4.92474 5.00068 5.03575 5.11737 5.23436 5.26502 5.38823 5.43005 5.49527 5.65147 5.90391 6.05769 6.16077 6.28961 6.61219 6.68723 6.98613 7.00719 8.38832 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.011535 C = 0.008421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.190293 B = 2426.839145 C = 3324.204958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 C -0.149 4.149 4 C -0.028 4.028 5 C 0.293 3.707 6 N -0.483 5.483 7 C -0.182 4.182 8 C -0.086 4.086 9 C -0.099 4.099 10 C -0.152 4.152 11 C 0.085 3.915 12 C -0.479 4.479 13 H 0.085 0.915 14 C 0.039 3.961 15 N -0.822 5.822 16 Si 0.973 3.027 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.259 1.259 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.039 0.961 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.121 0.879 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.113 0.887 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 1.863 -1.112 2.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 C -0.153 4.153 4 C -0.031 4.031 5 C -0.020 4.020 6 N -0.160 5.160 7 C -0.204 4.204 8 C -0.086 4.086 9 C -0.155 4.155 10 C -0.173 4.173 11 C 0.083 3.917 12 C -0.508 4.508 13 H 0.103 0.897 14 C -0.177 4.177 15 N -0.448 5.448 16 Si 0.795 3.205 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.182 1.182 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.139 0.861 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.968 1.140 0.285 2.292 hybrid contribution 0.109 -0.002 -1.116 1.121 sum -1.859 1.137 -0.831 2.332 Atomic orbital electron populations 1.21635 0.94687 1.01551 1.01191 1.20233 0.96306 0.92865 1.00910 1.20017 1.07897 0.96249 0.91185 1.15809 1.07429 0.94567 0.85307 1.26138 0.91623 0.91745 0.92461 1.81079 1.11940 1.10607 1.12340 1.20506 1.08953 0.93317 0.97617 1.19798 0.99389 0.97010 0.92431 1.20677 1.00809 0.91685 1.02376 1.21498 1.04274 0.94669 0.96811 1.17627 0.90362 0.91725 0.92007 1.19799 1.21572 1.16664 0.92758 0.89691 1.26621 0.93093 0.93504 1.04435 1.69841 1.13373 1.28611 1.32926 0.85303 0.78754 0.79697 0.76747 1.18967 1.19862 1.18236 0.92672 0.91436 0.94145 0.91148 0.93656 0.86071 0.90815 0.90876 0.92340 0.86894 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.88 71.98 0.71 -3.91 16 2 C -0.07 -2.60 5.05 29.85 0.15 -2.45 16 3 C -0.15 -6.63 5.23 -19.12 -0.10 -6.73 16 4 C -0.03 -1.16 5.72 -21.42 -0.12 -1.28 16 5 C 0.29 11.89 13.78 88.33 1.22 13.11 16 6 N -0.48 -19.87 18.54 19.00 0.35 -19.52 16 7 C -0.18 -7.22 9.40 22.71 0.21 -7.01 16 8 C -0.09 -3.49 5.87 -19.96 -0.12 -3.60 16 9 C -0.10 -3.12 10.00 71.24 0.71 -2.41 16 10 C -0.15 -7.12 8.31 22.77 0.19 -6.93 16 11 C 0.09 4.10 5.57 -21.32 -0.12 3.99 16 12 C -0.48 -22.96 8.14 23.47 0.19 -22.77 16 13 H 0.09 3.92 6.58 -2.91 -0.02 3.90 16 14 C 0.04 1.78 5.18 85.25 0.44 2.22 16 15 N -0.82 -39.22 10.87 21.83 0.24 -38.98 16 16 Si 0.97 35.38 29.59 68.60 2.03 37.41 16 17 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 18 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 19 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 20 H 0.05 1.96 7.88 -2.39 -0.02 1.94 16 21 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.07 2.84 6.77 -2.39 -0.02 2.83 16 24 H 0.04 1.75 7.08 -2.39 -0.02 1.73 16 25 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 26 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 28 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 29 H 0.11 5.52 6.13 -2.91 -0.02 5.50 16 30 H 0.29 12.50 8.30 -92.71 -0.77 11.73 16 Total: -1.00 -51.22 263.83 7.13 -44.09 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.14 Total: 14.78 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.37 Total: -37.78 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.59 Total: -58.50 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -51.22 7.13 -44.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647760.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.250 kcal (2) G-P(sol) polarization free energy of solvation -51.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds