Wall clock time and date at job start Mon Mar 30 2020 02:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50693 * 109.46901 * 2 1 4 4 C 1.37761 * 119.79612 * 264.99693 * 3 2 1 5 5 C 1.40752 * 120.05591 * 180.02562 * 4 3 2 6 6 C 1.41437 * 120.17638 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00119 * 24.45794 * 6 5 4 8 8 C 1.39935 * 120.00123 * 204.46539 * 6 5 4 9 9 N 1.30830 * 120.00163 * 17.87417 * 8 6 5 10 10 Si 1.86801 * 119.99600 * 197.87865 * 8 6 5 11 11 H 1.48502 * 109.47079 * 89.99790 * 10 8 6 12 12 H 1.48503 * 109.47148 * 209.99618 * 10 8 6 13 13 H 1.48494 * 109.47565 * 329.99652 * 10 8 6 14 14 C 1.40502 * 119.65411 * 359.97438 * 5 4 3 15 15 C 1.39051 * 119.58707 * 0.02562 * 14 5 4 16 16 C 1.43206 * 120.03124 * 179.97438 * 15 14 5 17 17 N 5.95779 * 102.96747 * 36.29656 * 2 1 3 18 18 C 1.38321 * 119.79449 * 85.02678 * 3 2 1 19 19 C 1.50704 * 119.81798 * 359.97171 * 18 3 2 20 20 H 1.08996 * 109.46804 * 60.00055 * 1 2 3 21 21 H 1.08995 * 109.47150 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46978 * 299.99807 * 1 2 3 23 23 H 1.09000 * 109.46978 * 240.00193 * 2 1 3 24 24 H 1.08994 * 109.46666 * 120.00469 * 2 1 3 25 25 H 1.08003 * 119.96978 * 359.74784 * 4 3 2 26 26 H 0.96994 * 119.99856 * 179.97438 * 9 8 6 27 27 H 1.07995 * 120.20765 * 180.02562 * 14 5 4 28 28 H 1.08996 * 109.47010 * 90.00666 * 19 18 3 29 29 H 1.09001 * 109.46807 * 210.00289 * 19 18 3 30 30 H 1.09002 * 109.47275 * 330.00233 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3588 2.0314 -1.1909 5 6 2.8289 3.3581 -1.1972 6 6 3.1654 3.9873 -2.4184 7 1 2.7189 3.6483 -3.3416 8 6 4.0768 5.0491 -2.4306 9 7 4.8737 5.2390 -1.4106 10 14 4.1554 6.1955 -3.9034 11 1 3.2177 7.3288 -3.6992 12 1 5.5378 6.7174 -4.0512 13 1 3.7732 5.4519 -5.1306 14 6 2.9623 4.0541 0.0160 15 6 2.6286 3.4236 1.2095 16 6 2.7614 4.1239 2.4516 17 7 2.8670 4.6793 3.4369 18 6 2.1633 2.1035 1.1959 19 6 1.8024 1.4225 2.4909 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.2581 1.4902 -2.1201 26 1 5.5056 5.9747 -1.4192 27 1 3.3218 5.0725 0.0215 28 1 2.6804 0.9168 2.8925 29 1 1.4520 2.1659 3.2069 30 1 1.0135 0.6923 2.3100 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575648998.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:13 Heat of formation + Delta-G solvation = 8.133051 kcal Electronic energy + Delta-G solvation = -13567.737023 eV Core-core repulsion = 11326.222458 eV Total energy + Delta-G solvation = -2241.514565 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21233 -37.46202 -36.30452 -34.22373 -32.96341 -30.23975 -29.21715 -25.88068 -24.54375 -23.55909 -21.41904 -19.19818 -18.10293 -17.07431 -16.31649 -15.94728 -15.27511 -14.96482 -14.55094 -14.46118 -14.03239 -13.81909 -13.65999 -13.31104 -13.26384 -13.00864 -12.78233 -12.62973 -12.47153 -12.18660 -11.90545 -11.70774 -11.43645 -11.20867 -10.97666 -9.36935 -9.10770 -8.64962 -6.32627 0.31500 0.96997 1.41742 1.49269 1.54199 1.73257 2.16682 2.22545 2.79170 3.20823 3.65187 4.19836 4.39298 4.43980 4.51058 4.72702 4.88635 4.92135 5.00326 5.07971 5.11562 5.15821 5.22566 5.32206 5.43746 5.56548 5.61713 5.82694 6.06266 6.06893 6.29747 6.48556 6.67725 6.91750 6.93903 8.31959 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.010036 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.155138 B = 2789.230456 C = 3652.542697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.055 4.055 4 C -0.195 4.195 5 C 0.077 3.923 6 C -0.489 4.489 7 H 0.085 0.915 8 C 0.035 3.965 9 N -0.828 5.828 10 Si 0.978 3.022 11 H -0.266 1.266 12 H -0.273 1.273 13 H -0.253 1.253 14 C -0.135 4.135 15 C -0.036 4.036 16 C 0.292 3.708 17 N -0.486 5.486 18 C -0.157 4.157 19 C -0.095 4.095 20 H 0.046 0.954 21 H 0.075 0.925 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.287 0.713 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 -7.008 -1.280 8.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.055 4.055 4 C -0.216 4.216 5 C 0.075 3.925 6 C -0.519 4.519 7 H 0.103 0.897 8 C -0.180 4.180 9 N -0.454 5.454 10 Si 0.799 3.201 11 H -0.191 1.191 12 H -0.198 1.198 13 H -0.176 1.176 14 C -0.158 4.158 15 C -0.040 4.040 16 C -0.021 4.021 17 N -0.163 5.163 18 C -0.160 4.160 19 C -0.152 4.152 20 H 0.065 0.935 21 H 0.094 0.906 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.129 0.871 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.596 -6.013 0.335 7.576 hybrid contribution 0.479 0.856 -0.942 1.360 sum -4.117 -5.157 -0.608 6.627 Atomic orbital electron populations 1.21717 0.94096 1.02243 1.01749 1.20527 0.96691 0.91252 1.02982 1.19506 0.98103 0.96531 0.91382 1.21283 1.08734 0.94338 0.97196 1.17753 0.90421 0.91556 0.92818 1.19836 1.22714 1.14595 0.94736 0.89668 1.26730 0.92850 0.98229 1.00153 1.69853 1.15379 1.27662 1.32508 0.85249 0.78261 0.78198 0.78378 1.19110 1.19782 1.17625 1.21300 1.03716 0.99623 0.91120 1.16015 1.07757 0.94439 0.85787 1.26262 0.91506 0.91719 0.92607 1.81042 1.11903 1.10813 1.12553 1.19356 1.08121 0.92486 0.96061 1.20649 1.01746 0.99822 0.92946 0.93497 0.90570 0.92769 0.90947 0.90136 0.87082 0.90215 0.87815 0.91832 0.94066 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.69 71.98 0.70 -2.61 16 2 C -0.08 -2.12 5.36 29.85 0.16 -1.96 16 3 C -0.06 -2.06 5.12 -19.96 -0.10 -2.16 16 4 C -0.20 -8.40 9.40 22.77 0.21 -8.19 16 5 C 0.08 3.82 5.57 -21.33 -0.12 3.70 16 6 C -0.49 -24.51 9.05 23.47 0.21 -24.29 16 7 H 0.09 4.05 7.91 -2.91 -0.02 4.02 16 8 C 0.04 1.70 5.14 85.25 0.44 2.14 16 9 N -0.83 -42.28 10.96 21.82 0.24 -42.04 16 10 Si 0.98 36.85 29.60 68.60 2.03 38.88 16 11 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 12 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 13 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 14 C -0.14 -6.80 8.40 23.02 0.19 -6.60 16 15 C -0.04 -1.64 5.72 -21.41 -0.12 -1.76 16 16 C 0.29 12.97 13.76 88.33 1.22 14.19 16 17 N -0.49 -21.81 18.54 19.01 0.35 -21.45 16 18 C -0.16 -6.11 5.93 -19.42 -0.12 -6.23 16 19 C -0.10 -2.96 8.79 71.24 0.63 -2.33 16 20 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.05 1.28 6.89 -2.39 -0.02 1.26 16 23 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 24 H 0.08 1.95 6.96 -2.39 -0.02 1.93 16 25 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 26 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 27 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.32 7.07 -2.39 -0.02 1.31 16 30 H 0.09 2.26 5.37 -2.39 -0.01 2.24 16 Total: -1.00 -54.97 261.51 7.07 -47.90 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.15 Total: 12.81 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 3.30 Total: -36.09 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: 0.59 Total: -63.50 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Total: -54.97 7.07 -47.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648998.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.032 kcal (2) G-P(sol) polarization free energy of solvation -54.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds