Wall clock time and date at job start Mon Mar 30 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 119.99964 * 2 1 4 4 C 1.38212 * 119.99666 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00641 * 0.02618 * 4 3 2 6 6 C 1.38215 * 119.99420 * 359.95255 * 5 4 3 7 7 C 1.50694 * 119.99701 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47412 * 89.99815 * 7 6 5 9 9 H 1.08998 * 109.47285 * 305.00031 * 8 7 6 10 10 C 1.47200 * 109.47044 * 64.99995 * 8 7 6 11 11 N 4.40879 * 100.56199 * 142.96985 * 2 1 3 12 12 C 1.50700 * 109.47208 * 184.99886 * 8 7 6 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 8 7 14 14 C 1.37871 * 120.00083 * 180.02562 * 12 8 7 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 8 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 8 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 C 1.38218 * 120.00045 * 180.21286 * 2 1 3 21 21 H 1.08996 * 109.47087 * 90.00268 * 1 2 3 22 22 H 1.09002 * 109.46670 * 209.99913 * 1 2 3 23 23 H 1.08995 * 109.46706 * 329.99810 * 1 2 3 24 24 H 1.07996 * 119.99724 * 359.97438 * 3 2 1 25 25 H 1.08000 * 119.99783 * 179.97438 * 4 3 2 26 26 H 1.07996 * 120.00380 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47461 * 329.99655 * 7 6 5 28 28 H 1.09005 * 109.47220 * 210.00092 * 7 6 5 29 29 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 30 30 H 1.07997 * 120.00233 * 0.04078 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1970 0.0010 7 6 4.3342 -2.5020 0.0015 8 6 4.5892 -2.9432 1.4442 9 1 5.1009 -2.1457 1.9830 10 6 3.3052 -3.2346 2.1024 11 7 2.3151 -3.4600 2.6101 12 6 5.4474 -4.1819 1.4465 13 1 5.7782 -4.6114 0.5124 14 6 5.8102 -4.7670 2.6411 15 7 5.4069 -4.2444 3.7785 16 14 6.8745 -6.3022 2.6440 17 1 7.1219 -6.7303 4.0442 18 1 6.1781 -7.3887 1.9092 19 1 8.1701 -6.0075 1.9808 20 6 2.1981 -1.1970 -0.0044 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3632 0.8899 0.5139 24 1 1.6583 2.1326 -0.0004 25 1 4.1204 2.1326 0.0001 26 1 5.3518 0.0000 0.0005 27 1 5.2866 -2.3720 -0.5124 28 1 3.7451 -3.2619 -0.5121 29 1 4.8545 -3.4470 3.7770 30 1 1.6582 -2.1323 -0.0086 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584622868.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:58 Heat of formation + Delta-G solvation = 5.443384 kcal Electronic energy + Delta-G solvation = -13452.956806 eV Core-core repulsion = 11211.325608 eV Total energy + Delta-G solvation = -2241.631198 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46296 -38.12204 -35.59900 -34.45097 -33.08064 -30.82389 -27.82144 -26.63859 -24.85513 -22.89654 -21.47718 -19.63781 -17.73478 -17.35283 -16.37328 -16.01652 -15.67652 -15.16277 -15.00961 -14.46871 -14.31977 -13.94603 -13.65175 -13.39839 -13.15889 -13.14876 -12.86214 -12.61198 -12.33324 -12.01578 -11.93702 -11.79766 -11.74330 -10.76642 -10.63502 -9.67075 -9.43849 -8.71552 -6.52216 0.46842 0.49799 1.58393 1.64863 1.83610 2.09342 2.16167 2.58378 2.87193 3.07771 3.68121 3.86115 3.98540 4.10162 4.27882 4.44201 4.47483 4.57709 4.64674 4.75729 4.82401 4.91878 5.00763 5.19336 5.26858 5.33171 5.58383 5.67953 5.77731 5.80965 6.08388 6.17689 6.41962 6.96173 7.31443 8.65642 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.046552 B = 0.007519 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.335383 B = 3723.076566 C = 4010.066182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.133 4.133 4 C -0.115 4.115 5 C -0.131 4.131 6 C -0.091 4.091 7 C -0.050 4.050 8 C 0.117 3.883 9 H 0.052 0.948 10 C 0.248 3.752 11 N -0.536 5.536 12 C -0.604 4.604 13 H 0.081 0.919 14 C -0.028 4.028 15 N -0.927 5.927 16 Si 1.116 2.884 17 H -0.292 1.292 18 H -0.274 1.274 19 H -0.254 1.254 20 C -0.138 4.138 21 H 0.084 0.916 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.147 0.853 25 H 0.151 0.849 26 H 0.137 0.863 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.256 0.744 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 9.888 -10.373 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.133 4.133 5 C -0.149 4.149 6 C -0.091 4.091 7 C -0.088 4.088 8 C 0.095 3.905 9 H 0.069 0.931 10 C -0.067 4.067 11 N -0.215 5.215 12 C -0.643 4.643 13 H 0.099 0.901 14 C -0.228 4.228 15 N -0.563 5.563 16 Si 0.937 3.063 17 H -0.218 1.218 18 H -0.199 1.199 19 H -0.178 1.178 20 C -0.156 4.156 21 H 0.103 0.897 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.164 0.836 25 H 0.169 0.831 26 H 0.155 0.845 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.710 8.471 -8.625 12.389 hybrid contribution -0.621 0.896 -0.675 1.282 sum -3.330 9.366 -9.300 13.613 Atomic orbital electron populations 1.20802 0.89982 1.02835 1.03107 1.20219 0.97286 0.93075 0.99396 1.21317 0.94672 0.97700 1.01402 1.21474 0.94486 0.98504 0.98850 1.21316 1.00877 0.91790 1.00934 1.20182 0.93822 0.96060 0.99012 1.20459 1.00889 0.92947 0.94544 1.16921 0.82921 0.98059 0.92585 0.93076 1.31024 0.94419 0.89904 0.91332 1.80827 1.15421 1.13305 1.11906 1.22247 1.33220 1.12455 0.96361 0.90079 1.27449 0.98383 1.05162 0.91810 1.70953 1.34127 1.22197 1.29025 0.82947 0.75639 0.71681 0.76060 1.21822 1.19894 1.17779 1.20981 0.94165 0.97661 1.02800 0.89702 0.93083 0.89909 0.83553 0.83137 0.84490 0.87938 0.91740 0.93318 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 10.01 71.24 0.71 -1.89 16 2 C -0.10 -2.92 5.88 -19.86 -0.12 -3.04 16 3 C -0.13 -3.34 9.70 22.27 0.22 -3.12 16 4 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 5 C -0.13 -3.87 9.70 22.27 0.22 -3.65 16 6 C -0.09 -3.14 4.83 -19.87 -0.10 -3.24 16 7 C -0.05 -1.86 4.76 29.85 0.14 -1.72 16 8 C 0.12 5.48 1.90 -13.34 -0.03 5.45 16 9 H 0.05 2.50 8.01 -2.39 -0.02 2.48 16 10 C 0.25 12.82 11.24 89.45 1.01 13.82 16 11 N -0.54 -29.00 18.53 20.00 0.37 -28.63 16 12 C -0.60 -30.77 8.54 25.60 0.22 -30.55 16 13 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 14 C -0.03 -1.52 5.30 84.65 0.45 -1.07 16 15 N -0.93 -55.49 13.38 21.45 0.29 -55.21 16 16 Si 1.12 47.25 29.90 68.60 2.05 49.30 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 20 C -0.14 -4.82 8.53 22.27 0.19 -4.63 16 21 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.05 1.33 8.09 -2.39 -0.02 1.31 16 23 H 0.08 1.60 8.09 -2.39 -0.02 1.58 16 24 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 25 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 26 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.10 3.36 8.09 -2.38 -0.02 3.34 16 28 H 0.06 2.41 8.08 -2.38 -0.02 2.40 16 29 H 0.26 15.65 6.03 -92.70 -0.56 15.09 16 30 H 0.10 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -65.02 268.07 7.17 -57.84 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.33 Total: 12.99 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.14 Total: -36.30 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: 0.66 Total: -83.83 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.05 Total: 49.30 kcal Total: -65.02 7.17 -57.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584622868.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.285 kcal (2) G-P(sol) polarization free energy of solvation -65.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds