Wall clock time and date at job start Mon Mar 30 2020 03:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.57208 * 2 1 4 4 C 1.53095 * 109.57867 * 239.61775 * 2 1 3 5 5 C 1.52408 * 109.89450 * 177.17237 * 4 2 1 6 6 C 1.52571 * 110.82257 * 70.75740 * 5 4 2 7 7 H 1.09001 * 109.39003 * 169.15841 * 6 5 4 8 8 N 1.46503 * 109.39262 * 49.35864 * 6 5 4 9 9 C 1.46494 * 120.00006 * 40.93395 * 8 6 5 10 10 C 1.36935 * 120.00080 * 220.93725 * 8 6 5 11 11 H 1.08008 * 119.99758 * 45.94166 * 10 8 6 12 12 C 1.38811 * 120.00003 * 225.94172 * 10 8 6 13 13 N 1.31628 * 119.99848 * 184.28315 * 12 10 8 14 14 Si 1.86792 * 120.00032 * 4.28747 * 12 10 8 15 15 H 1.48503 * 109.46930 * 273.64545 * 14 12 10 16 16 H 1.48497 * 109.47224 * 33.64503 * 14 12 10 17 17 H 1.48498 * 109.47643 * 153.64627 * 14 12 10 18 18 C 1.53095 * 109.88068 * 289.25677 * 6 5 4 19 19 S 1.81744 * 108.84057 * 62.97228 * 18 6 5 20 20 H 1.08996 * 109.47450 * 299.74045 * 1 2 3 21 21 H 1.09004 * 109.47181 * 59.74412 * 1 2 3 22 22 H 1.09003 * 109.46843 * 179.73600 * 1 2 3 23 23 H 1.09006 * 109.38766 * 297.31645 * 4 2 1 24 24 H 1.08999 * 109.39519 * 57.11211 * 4 2 1 25 25 H 1.09005 * 109.27200 * 310.34399 * 5 4 2 26 26 H 1.09000 * 109.08201 * 191.04576 * 5 4 2 27 27 H 1.09008 * 109.46870 * 277.48534 * 9 8 6 28 28 H 1.08995 * 109.47340 * 37.48070 * 9 8 6 29 29 H 1.08995 * 109.47215 * 157.48836 * 9 8 6 30 30 H 0.97001 * 119.99490 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.58299 * 182.78572 * 18 6 5 32 32 H 1.09004 * 109.57490 * 303.04515 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0430 -0.7295 -1.2443 5 6 3.5654 -0.6731 -1.2879 6 6 4.1721 -1.5573 -0.2026 7 1 5.2446 -1.6538 -0.3721 8 7 3.5508 -2.8832 -0.2516 9 6 3.2773 -3.5166 -1.5439 10 6 3.2256 -3.5303 0.9105 11 1 2.7183 -2.9977 1.7014 12 6 3.5479 -4.8708 1.0721 13 7 3.1615 -5.5150 2.1529 14 14 4.5302 -5.7604 -0.2443 15 1 3.6062 -6.2841 -1.2822 16 1 5.4911 -4.8156 -0.8682 17 1 5.2742 -6.8888 0.3709 18 6 3.9293 -0.9329 1.1739 19 16 2.1390 -0.8628 1.4791 20 1 -0.3634 0.5098 0.8922 21 1 -0.3634 0.5178 -0.8877 22 1 -0.3633 -1.0277 -0.0047 23 1 1.7196 -1.7701 -1.2128 24 1 1.6383 -0.2518 -2.1366 25 1 3.8917 0.3559 -1.1366 26 1 3.9070 -1.0174 -2.2640 27 1 2.3383 -3.1343 -1.9445 28 1 4.0869 -3.2908 -2.2379 29 1 3.2030 -4.5959 -1.4111 30 1 3.3871 -6.4516 2.2659 31 1 4.4070 -1.5423 1.9410 32 1 4.3451 0.0745 1.1964 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606259445.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:53 Heat of formation + Delta-G solvation = 8.603960 kcal Electronic energy + Delta-G solvation = -13610.858066 eV Core-core repulsion = 11504.807872 eV Total energy + Delta-G solvation = -2106.050194 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.38615 -35.92444 -33.87996 -32.32581 -30.09311 -27.33741 -26.16263 -24.46029 -22.48177 -20.61845 -18.52705 -17.95147 -17.06218 -16.32558 -15.86553 -15.16020 -14.92164 -14.70312 -14.32880 -14.24146 -13.79705 -13.52325 -13.15535 -12.82921 -12.55646 -12.38746 -12.31209 -11.99247 -11.68904 -11.61487 -11.39205 -11.22300 -10.58073 -10.26009 -8.49520 -8.20143 -7.81153 -5.53604 1.09417 1.32256 1.42027 1.52376 1.92821 2.51455 3.29184 3.33335 3.87688 3.99210 4.13191 4.17732 4.42642 4.47685 4.53508 4.62332 4.74676 4.78105 4.85933 4.90591 4.99050 5.01099 5.12738 5.21747 5.27469 5.32575 5.61182 6.13818 6.62677 7.13947 7.76458 8.21108 9.17930 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037871 B = 0.012845 C = 0.011606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.165043 B = 2179.314512 C = 2412.008901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.043 4.043 3 H 0.094 0.906 4 C -0.114 4.114 5 C -0.128 4.128 6 C 0.166 3.834 7 H 0.039 0.961 8 N -0.613 5.613 9 C 0.103 3.897 10 C -0.236 4.236 11 H 0.085 0.915 12 C -0.035 4.035 13 N -0.967 5.967 14 Si 0.955 3.045 15 H -0.280 1.280 16 H -0.261 1.261 17 H -0.323 1.323 18 C -0.061 4.061 19 S -0.299 6.299 20 H 0.059 0.941 21 H 0.092 0.908 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.026 0.974 30 H 0.255 0.745 31 H 0.077 0.923 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 12.888 -9.202 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.171 4.171 3 H 0.112 0.888 4 C -0.153 4.153 5 C -0.167 4.167 6 C 0.059 3.941 7 H 0.056 0.944 8 N -0.340 5.340 9 C -0.041 4.041 10 C -0.367 4.367 11 H 0.102 0.898 12 C -0.229 4.229 13 N -0.613 5.613 14 Si 0.787 3.213 15 H -0.208 1.208 16 H -0.186 1.186 17 H -0.253 1.253 18 C -0.210 4.210 19 S -0.072 6.072 20 H 0.078 0.922 21 H 0.111 0.889 22 H 0.063 0.937 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.153 12.406 -8.260 14.949 hybrid contribution 1.169 -0.811 -0.985 1.730 sum 0.016 11.595 -9.245 14.829 Atomic orbital electron populations 1.21550 0.91738 1.02054 1.03030 1.23183 0.99532 1.00099 0.94325 0.88751 1.21780 0.95526 1.01545 0.96440 1.21809 0.95884 0.99925 0.99058 1.20640 0.95172 0.85166 0.93098 0.94369 1.44070 1.71089 1.17333 1.01497 1.21507 0.98889 0.95936 0.87748 1.19416 1.28901 0.93388 0.95016 0.89787 1.26365 0.99437 0.99350 0.97759 1.69916 1.51529 1.10117 1.29782 0.85766 0.79271 0.77162 0.79059 1.20769 1.18566 1.25297 1.23578 0.93406 1.03029 1.00961 1.87184 1.09612 1.77739 1.32702 0.92183 0.88939 0.93704 0.91475 0.89600 0.89887 0.90803 0.94698 0.93410 0.95617 0.93587 0.90441 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.22 71.98 0.66 -2.54 16 2 C -0.04 -1.23 3.11 30.62 0.10 -1.14 16 3 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 4 C -0.11 -3.22 4.69 30.43 0.14 -3.08 16 5 C -0.13 -3.54 4.70 30.26 0.14 -3.40 16 6 C 0.17 6.06 3.38 44.88 0.15 6.21 16 7 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 8 N -0.61 -27.60 1.78 -703.41 -1.25 -28.86 16 9 C 0.10 4.20 7.55 127.77 0.97 5.16 16 10 C -0.24 -13.07 8.18 84.03 0.69 -12.38 16 11 H 0.09 5.06 5.05 -11.52 -0.06 5.00 16 12 C -0.04 -2.08 5.46 84.86 0.46 -1.62 16 13 N -0.97 -62.23 13.97 21.65 0.30 -61.93 16 14 Si 0.96 47.84 24.66 68.60 1.69 49.53 16 15 H -0.28 -13.42 6.60 99.48 0.66 -12.76 16 16 H -0.26 -12.29 6.99 99.48 0.70 -11.60 16 17 H -0.32 -16.75 7.11 99.48 0.71 -16.05 16 18 C -0.06 -2.25 5.37 72.01 0.39 -1.86 16 19 S -0.30 -11.68 18.47 -56.49 -1.04 -12.72 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 2.38 4.84 -2.38 -0.01 2.37 16 24 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.08 1.88 8.08 -2.38 -0.02 1.86 16 26 H 0.07 1.88 7.60 -2.39 -0.02 1.86 16 27 H 0.04 1.31 5.96 -2.38 -0.01 1.30 16 28 H 0.05 1.69 7.85 -2.39 -0.02 1.67 16 29 H 0.03 1.17 3.30 -2.39 -0.01 1.16 16 30 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 31 H 0.08 3.33 7.53 -2.39 -0.02 3.31 16 32 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -66.85 246.78 4.38 -62.47 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 0.99 Total: 6.15 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 3.70 Total: -14.64 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -0.95 Total: -90.79 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.69 Total: 49.53 kcal Atomic # 16 Polarization: -11.68 SS G_CDS: -1.04 Total: -12.72 kcal Total: -66.85 4.38 -62.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606259445.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.076 kcal (2) G-P(sol) polarization free energy of solvation -66.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds