Wall clock time and date at job start Mon Mar 30 2020 02:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46898 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99616 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.28417 * 327.12431 * 11 10 9 13 13 C 1.53076 * 110.32601 * 204.99838 * 11 10 9 14 14 C 1.44824 * 115.41497 * 146.55585 * 13 11 10 15 15 C 1.55238 * 110.45488 * 64.06529 * 14 13 11 16 16 S 1.79258 * 109.69203 * 286.73523 * 15 14 13 17 17 C 1.82323 * 106.80823 * 88.65123 * 16 15 14 18 18 C 1.51418 * 110.32305 * 89.41358 * 11 10 9 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 21 21 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 22 22 H 1.00897 * 110.99928 * 303.94599 * 10 9 7 23 23 H 1.09002 * 108.29318 * 268.09633 * 13 11 10 24 24 H 1.08997 * 108.28931 * 25.20175 * 13 11 10 25 25 H 1.09001 * 109.30063 * 184.37047 * 14 13 11 26 26 H 1.09001 * 109.30229 * 303.95891 * 14 13 11 27 27 H 1.09010 * 109.43180 * 46.79967 * 15 14 13 28 28 H 1.08993 * 109.43560 * 166.70481 * 15 14 13 29 29 H 1.09006 * 109.18064 * 79.45860 * 17 16 15 30 30 H 1.08996 * 109.18803 * 198.75226 * 17 16 15 31 31 H 1.08994 * 109.53113 * 344.20014 * 18 11 10 32 32 H 1.09001 * 109.52689 * 104.41820 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2057 -3.6157 -0.0131 11 6 1.5054 -4.9070 -0.0128 12 1 0.5731 -4.8312 0.5468 13 6 2.3985 -5.9960 0.5869 14 6 1.7057 -7.0301 1.3272 15 6 0.7691 -7.8356 0.3870 16 16 -0.6601 -6.8409 -0.0388 17 6 -0.2146 -5.8882 -1.5281 18 6 1.2351 -5.3590 -1.4325 19 1 -0.4850 -0.8400 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 2.8369 -3.5465 -0.7972 23 1 2.9529 -6.4688 -0.2239 24 1 3.1146 -5.5205 1.2570 25 1 2.4363 -7.7052 1.7729 26 1 1.1108 -6.5709 2.1168 27 1 1.3092 -8.1020 -0.5216 28 1 0.4407 -8.7433 0.8931 29 1 -0.3044 -6.5306 -2.4042 30 1 -0.8971 -5.0446 -1.6312 31 1 1.3613 -4.5172 -2.1132 32 1 1.9314 -6.1535 -1.7007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642857972.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:59 Heat of formation + Delta-G solvation = -14.272659 kcal Electronic energy + Delta-G solvation = -12858.111067 eV Core-core repulsion = 10751.068868 eV Total energy + Delta-G solvation = -2107.042199 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.22546 -34.45953 -32.87436 -31.36938 -28.29551 -25.82411 -24.03247 -22.04732 -21.46829 -20.31537 -16.86438 -16.34023 -15.40093 -14.76506 -14.53392 -14.28581 -13.71984 -13.58877 -13.26991 -12.67707 -12.52146 -11.92960 -11.66878 -11.52208 -11.07837 -10.88783 -10.68770 -10.64326 -10.32725 -10.22129 -10.04583 -9.59286 -8.61694 -8.40532 -7.47617 -7.38897 -6.36478 -4.05569 1.73497 2.73324 3.44874 3.47706 3.66209 4.52758 4.70246 4.71769 4.90656 5.00818 5.15340 5.29497 5.39042 5.41372 5.48467 5.68174 5.82143 5.86714 5.96774 6.11538 6.25921 6.29736 6.53370 6.61584 6.99197 7.19295 7.81441 8.17458 8.48637 8.58886 8.88359 9.66377 11.03332 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.052219 B = 0.006957 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.074672 B = 4023.855265 C = 4261.263642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 1.073 2.927 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.597 4.597 8 H 0.055 0.945 9 C 0.187 3.813 10 N -0.675 5.675 11 C 0.077 3.923 12 H 0.099 0.901 13 C -0.122 4.122 14 C -0.106 4.106 15 C -0.091 4.091 16 S -0.261 6.261 17 C -0.077 4.077 18 C -0.153 4.153 19 H 0.267 0.733 20 H 0.019 0.981 21 H -0.025 1.025 22 H 0.329 0.671 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -14.501 -1.555 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.636 4.636 8 H 0.073 0.927 9 C 0.060 3.940 10 N -0.304 5.304 11 C -0.035 4.035 12 H 0.117 0.883 13 C -0.160 4.160 14 C -0.146 4.146 15 C -0.240 4.240 16 S -0.034 6.034 17 C -0.226 4.226 18 C -0.194 4.194 19 H 0.078 0.922 20 H 0.037 0.963 21 H -0.007 1.007 22 H 0.146 0.854 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.089 -12.819 -0.357 12.871 hybrid contribution 1.034 -1.847 -1.703 2.717 sum 2.123 -14.667 -2.060 14.962 Atomic orbital electron populations 1.70789 1.06870 1.30477 1.46794 1.25857 0.96502 1.02733 0.93840 0.83486 0.74785 0.75101 0.76515 1.20808 1.21367 1.21523 1.22020 0.94779 0.91387 1.55394 0.92686 1.19647 0.91164 0.88757 0.94468 1.60610 1.20574 1.00618 1.48592 1.21674 0.98067 0.90506 0.93263 0.88300 1.20375 0.99390 0.95818 1.00388 1.20605 0.98380 0.97335 0.98291 1.23620 0.97682 1.00078 1.02600 1.86155 1.24164 1.53758 1.39309 1.23924 1.00901 1.01388 0.96377 1.22952 0.94349 1.01370 1.00700 0.92246 0.96325 1.00745 0.85402 0.93337 0.90727 0.91321 0.90669 0.90225 0.88272 0.90520 0.87937 0.90659 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 13.65 55.43 0.76 -27.48 16 2 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 25.58 29.90 -169.99 -5.08 20.50 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.60 -17.29 9.32 -34.44 -0.32 -17.61 16 8 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.19 4.90 4.59 -4.97 -0.02 4.88 16 10 N -0.68 -14.55 6.12 -108.80 -0.67 -15.22 16 11 C 0.08 1.34 2.21 -68.47 -0.15 1.19 16 12 H 0.10 1.92 5.92 -51.93 -0.31 1.62 16 13 C -0.12 -1.77 4.71 -30.52 -0.14 -1.91 16 14 C -0.11 -1.31 5.48 -29.37 -0.16 -1.47 16 15 C -0.09 -1.06 5.94 38.34 0.23 -0.83 16 16 S -0.26 -3.71 20.08 -107.50 -2.16 -5.87 16 17 C -0.08 -1.09 6.60 38.01 0.25 -0.84 16 18 C -0.15 -2.31 5.24 -26.68 -0.14 -2.45 16 19 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 20 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 21 H -0.03 -0.68 8.00 -51.93 -0.42 -1.10 16 22 H 0.33 6.82 8.27 -39.29 -0.32 6.50 16 23 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 24 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 27 H 0.08 0.86 7.89 -51.75 -0.41 0.45 16 28 H 0.10 0.98 8.14 -51.75 -0.42 0.56 16 29 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.07 1.24 7.73 -51.93 -0.40 0.84 16 32 H 0.06 0.86 6.55 -51.93 -0.34 0.52 16 LS Contribution 263.29 15.07 3.97 3.97 Total: -1.00 -30.50 263.29 -8.72 -39.22 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.98 Total: 3.60 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -0.56 Total: -18.72 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.09 Total: -42.70 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.50 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.16 Total: -5.87 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.50 -8.72 -39.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857972.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.950 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds