Wall clock time and date at job start Mon Mar 30 2020 02:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46898 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99616 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.28417 * 327.12431 * 11 10 9 13 13 C 1.53076 * 110.32601 * 204.99838 * 11 10 9 14 14 C 1.44824 * 115.41497 * 146.55585 * 13 11 10 15 15 C 1.55238 * 110.45488 * 64.06529 * 14 13 11 16 16 S 1.79258 * 109.69203 * 286.73523 * 15 14 13 17 17 C 1.82323 * 106.80823 * 88.65123 * 16 15 14 18 18 C 1.51418 * 110.32305 * 89.41358 * 11 10 9 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 21 21 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 22 22 H 1.00897 * 110.99928 * 303.94599 * 10 9 7 23 23 H 1.09002 * 108.29318 * 268.09633 * 13 11 10 24 24 H 1.08997 * 108.28931 * 25.20175 * 13 11 10 25 25 H 1.09001 * 109.30063 * 184.37047 * 14 13 11 26 26 H 1.09001 * 109.30229 * 303.95891 * 14 13 11 27 27 H 1.09010 * 109.43180 * 46.79967 * 15 14 13 28 28 H 1.08993 * 109.43560 * 166.70481 * 15 14 13 29 29 H 1.09006 * 109.18064 * 79.45860 * 17 16 15 30 30 H 1.08996 * 109.18803 * 198.75226 * 17 16 15 31 31 H 1.08994 * 109.53113 * 344.20014 * 18 11 10 32 32 H 1.09001 * 109.52689 * 104.41820 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2057 -3.6157 -0.0131 11 6 1.5054 -4.9070 -0.0128 12 1 0.5731 -4.8312 0.5468 13 6 2.3985 -5.9960 0.5869 14 6 1.7057 -7.0301 1.3272 15 6 0.7691 -7.8356 0.3870 16 16 -0.6601 -6.8409 -0.0388 17 6 -0.2146 -5.8882 -1.5281 18 6 1.2351 -5.3590 -1.4325 19 1 -0.4850 -0.8400 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 2.8369 -3.5465 -0.7972 23 1 2.9529 -6.4688 -0.2239 24 1 3.1146 -5.5205 1.2570 25 1 2.4363 -7.7052 1.7729 26 1 1.1108 -6.5709 2.1168 27 1 1.3092 -8.1020 -0.5216 28 1 0.4407 -8.7433 0.8931 29 1 -0.3044 -6.5306 -2.4042 30 1 -0.8971 -5.0446 -1.6312 31 1 1.3613 -4.5172 -2.1132 32 1 1.9314 -6.1535 -1.7007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642857972.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:59 Heat of formation + Delta-G solvation = -34.163711 kcal Electronic energy + Delta-G solvation = -12858.973608 eV Core-core repulsion = 10751.068868 eV Total energy + Delta-G solvation = -2107.904739 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59907 -36.21244 -34.53685 -32.95288 -29.67653 -27.54848 -25.55641 -23.93937 -22.81947 -21.61094 -19.00140 -17.57706 -16.58653 -16.25863 -15.89611 -15.76907 -15.52646 -14.99448 -14.54344 -14.27891 -14.07431 -13.42856 -13.21931 -12.98418 -12.69402 -12.51417 -12.20561 -12.06718 -11.92262 -11.73054 -11.38310 -10.76786 -10.66998 -10.62320 -9.20316 -8.72232 -8.59668 -6.43576 0.66766 1.52861 1.61847 1.69777 1.81564 2.55295 3.12335 3.31096 3.61130 3.77664 3.90243 4.01042 4.11166 4.16134 4.49044 4.55273 4.63489 4.72368 4.73409 4.78928 4.91770 5.02002 5.07208 5.15182 5.34500 5.40062 5.74938 6.01563 6.38512 6.55695 6.71379 7.39436 8.67154 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.052219 B = 0.006957 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.074672 B = 4023.855265 C = 4261.263642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.124 2.876 4 H -0.283 1.283 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.614 4.614 8 H 0.056 0.944 9 C 0.203 3.797 10 N -0.677 5.677 11 C 0.071 3.929 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.105 4.105 15 C -0.077 4.077 16 S -0.304 6.304 17 C -0.071 4.071 18 C -0.145 4.145 19 H 0.253 0.747 20 H -0.012 1.012 21 H -0.044 1.044 22 H 0.335 0.665 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.838 -15.767 -1.914 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.944 3.056 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.652 4.652 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.306 5.306 11 C -0.040 4.040 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.145 4.145 15 C -0.225 4.225 16 S -0.077 6.077 17 C -0.220 4.220 18 C -0.185 4.185 19 H 0.062 0.938 20 H 0.006 0.994 21 H -0.027 1.027 22 H 0.152 0.848 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.799 -14.132 -0.720 14.425 hybrid contribution 0.497 -1.536 -1.561 2.245 sum 3.296 -15.668 -2.281 16.173 Atomic orbital electron populations 1.70927 1.07981 1.29638 1.48755 1.27515 0.96517 1.06919 0.92562 0.82855 0.73999 0.70639 0.78078 1.20850 1.19526 1.19136 1.22411 0.95069 0.92684 1.55030 0.92540 1.19266 0.91143 0.90084 0.92060 1.60517 1.19970 1.01104 1.49006 1.21738 0.97566 0.89579 0.95127 0.90776 1.20292 0.98619 0.95185 1.00908 1.20588 0.98869 0.97254 0.97764 1.23687 0.95901 0.99682 1.03250 1.86361 1.26908 1.54502 1.39907 1.23845 0.99562 1.01193 0.97350 1.22825 0.95796 1.01588 0.98336 0.93823 0.99380 1.02661 0.84763 0.91065 0.92166 0.88123 0.92526 0.88474 0.85980 0.87924 0.90076 0.92427 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.27 13.65 21.45 0.29 -58.98 16 2 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 3 Si 1.12 50.94 29.90 68.60 2.05 52.99 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.61 -36.06 9.32 25.60 0.24 -35.82 16 8 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 9 C 0.20 11.05 4.59 85.56 0.39 11.44 16 10 N -0.68 -29.52 6.12 -498.13 -3.05 -32.57 16 11 C 0.07 2.47 2.21 44.42 0.10 2.57 16 12 H 0.07 2.98 5.92 -2.39 -0.01 2.97 16 13 C -0.11 -3.02 4.71 28.14 0.13 -2.88 16 14 C -0.11 -2.31 5.48 28.89 0.16 -2.15 16 15 C -0.08 -1.53 5.94 72.75 0.43 -1.10 16 16 S -0.30 -8.37 20.08 -56.49 -1.13 -9.50 16 17 C -0.07 -1.96 6.60 72.53 0.48 -1.48 16 18 C -0.15 -4.23 5.24 30.63 0.16 -4.07 16 19 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 20 H -0.01 -0.71 7.94 -2.39 -0.02 -0.73 16 21 H -0.04 -2.53 8.00 -2.39 -0.02 -2.55 16 22 H 0.33 13.85 8.27 -89.70 -0.74 13.11 16 23 H 0.07 1.61 6.70 -2.39 -0.02 1.60 16 24 H 0.06 1.81 7.96 -2.39 -0.02 1.79 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.48 8.09 -2.39 -0.02 1.46 16 27 H 0.10 1.65 7.89 -2.49 -0.02 1.63 16 28 H 0.12 1.94 8.14 -2.51 -0.02 1.91 16 29 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.06 1.89 7.73 -2.39 -0.02 1.88 16 32 H 0.09 2.18 6.55 -2.39 -0.02 2.16 16 Total: -1.00 -67.11 263.29 1.16 -65.95 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.45 Total: 17.37 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 2.55 Total: -35.26 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -2.76 Total: -91.55 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 52.99 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.13 Total: -9.50 kcal Total: -67.11 1.16 -65.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857972.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.790 kcal (2) G-P(sol) polarization free energy of solvation -67.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds