Wall clock time and date at job start Mon Mar 30 2020 02:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99443 * 2 1 4 4 H 1.48502 * 109.46453 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47330 * 299.99805 * 3 2 1 6 6 H 1.48495 * 109.47290 * 60.00188 * 3 2 1 7 7 C 1.37871 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99621 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47070 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00242 * 179.97438 * 10 9 7 12 12 H 1.09002 * 108.69238 * 34.99819 * 11 10 9 13 13 C 1.44532 * 108.73103 * 153.20843 * 11 10 9 14 14 C 1.53856 * 113.23701 * 186.61850 * 13 11 10 15 15 C 1.50760 * 108.56957 * 273.57448 * 14 13 11 16 16 S 1.82403 * 111.08618 * 95.92122 * 15 14 13 17 17 C 1.82399 * 105.00403 * 319.17438 * 16 15 14 18 18 C 1.50598 * 110.99734 * 319.21310 * 17 16 15 19 19 H 0.96996 * 120.00376 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47448 * 60.00382 * 9 7 2 21 21 H 1.09005 * 109.47078 * 299.99653 * 9 7 2 22 22 H 1.00898 * 110.99949 * 303.95439 * 10 9 7 23 23 H 1.08996 * 108.72882 * 307.59020 * 13 11 10 24 24 H 1.09003 * 108.72621 * 65.77335 * 13 11 10 25 25 H 1.09003 * 109.62046 * 33.29569 * 14 13 11 26 26 H 1.09001 * 109.62086 * 153.66113 * 14 13 11 27 27 H 1.09001 * 109.15080 * 216.33120 * 15 14 13 28 28 H 1.09002 * 109.15544 * 335.55566 * 15 14 13 29 29 H 1.09003 * 109.15192 * 79.59473 * 17 16 15 30 30 H 1.09000 * 109.15403 * 198.81876 * 17 16 15 31 31 H 1.09000 * 109.71189 * 336.18356 * 18 17 16 32 32 H 1.09001 * 109.43935 * 215.69140 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5055 -4.9070 0.0001 12 1 0.5953 -4.8111 -0.5918 13 6 2.3582 -5.8976 -0.6169 14 6 1.6639 -7.2558 -0.8176 15 6 1.8190 -8.0654 0.4447 16 16 0.3518 -7.8989 1.5156 17 6 -0.1050 -6.1357 1.4199 18 6 1.1191 -5.2589 1.4472 19 1 -0.4850 0.8400 -0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5570 0.8898 22 1 2.8406 -3.5486 -0.7819 23 1 2.6832 -5.5237 -1.5878 24 1 3.2359 -6.0447 0.0125 25 1 0.6052 -7.0988 -1.0238 26 1 2.1253 -7.7829 -1.6527 27 1 1.9530 -9.1149 0.1823 28 1 2.6982 -7.7174 0.9871 29 1 -0.6522 -5.9578 0.4941 30 1 -0.7439 -5.8853 2.2667 31 1 1.9413 -5.7902 1.9267 32 1 0.8987 -4.3453 1.9995 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642857973.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:02 Heat of formation + Delta-G solvation = -31.760791 kcal Electronic energy + Delta-G solvation = -12769.074985 eV Core-core repulsion = 10661.274444 eV Total energy + Delta-G solvation = -2107.800541 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80928 -35.89525 -34.28750 -33.20952 -30.30072 -27.69659 -25.41548 -23.90391 -22.35591 -21.49359 -18.63953 -17.66029 -16.73558 -16.66741 -16.31726 -15.57826 -15.23942 -14.52593 -14.41816 -14.18344 -13.86983 -13.50212 -13.36126 -13.09626 -12.76391 -12.73052 -12.24306 -11.91602 -11.84931 -11.68533 -11.52246 -11.16664 -10.69291 -10.60879 -9.16831 -8.67344 -8.24695 -6.36042 0.76746 1.39988 1.40769 1.54554 1.60735 2.38387 3.08784 3.29187 3.68801 3.84261 3.97305 4.09337 4.14845 4.37388 4.55037 4.58689 4.65518 4.76802 4.87297 4.93949 5.06105 5.09030 5.14263 5.25770 5.27920 5.34227 5.61095 6.01391 6.42678 6.70764 6.87890 7.35394 8.87049 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.062334 B = 0.006277 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.082157 B = 4459.949634 C = 4709.250856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.212 3.788 10 N -0.687 5.687 11 C 0.088 3.912 12 H 0.015 0.985 13 C -0.121 4.121 14 C -0.112 4.112 15 C -0.065 4.065 16 S -0.310 6.310 17 C -0.064 4.064 18 C -0.101 4.101 19 H 0.265 0.735 20 H -0.043 1.043 21 H 0.001 0.999 22 H 0.335 0.665 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.715 -14.540 -0.770 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.084 3.916 10 N -0.318 5.318 11 C -0.022 4.022 12 H 0.033 0.967 13 C -0.159 4.159 14 C -0.151 4.151 15 C -0.213 4.213 16 S -0.085 6.085 17 C -0.213 4.213 18 C -0.140 4.140 19 H 0.074 0.926 20 H -0.025 1.025 21 H 0.020 0.980 22 H 0.153 0.847 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.140 0.860 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.161 -15.201 0.487 15.534 hybrid contribution 0.089 2.079 -1.452 2.537 sum 3.250 -13.122 -0.965 13.553 Atomic orbital electron populations 1.70096 1.07831 1.27960 1.51587 1.25962 0.95780 1.03437 0.94567 0.85276 0.78946 0.78266 0.77755 1.18606 1.20280 1.20416 1.21597 0.93828 0.91504 1.50508 0.91744 1.19206 0.90565 0.88839 0.93019 1.60663 1.20405 1.01340 1.49384 1.20219 0.95926 0.90568 0.95508 0.96702 1.20466 0.99201 0.94972 1.01228 1.21540 1.01414 0.94510 0.97665 1.23321 0.96132 1.05121 0.96689 1.86746 1.41308 1.14096 1.66334 1.23095 1.00293 0.92123 1.05739 1.21482 0.96662 0.98946 0.96917 0.92615 1.02542 0.98049 0.84660 0.91392 0.90359 0.91919 0.87697 0.86037 0.89225 0.90493 0.88002 0.90178 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.65 9.32 25.60 0.24 -30.41 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.34 5.16 85.56 0.44 11.78 16 10 N -0.69 -29.03 6.23 -507.46 -3.16 -32.19 16 11 C 0.09 2.98 1.95 42.65 0.08 3.06 16 12 H 0.02 0.57 6.83 -2.39 -0.02 0.55 16 13 C -0.12 -3.07 4.44 28.33 0.13 -2.94 16 14 C -0.11 -2.25 5.59 30.16 0.17 -2.08 16 15 C -0.07 -1.26 5.76 71.25 0.41 -0.85 16 16 S -0.31 -7.81 21.98 -56.49 -1.24 -9.06 16 17 C -0.06 -1.84 5.76 71.20 0.41 -1.43 16 18 C -0.10 -3.27 5.13 30.11 0.15 -3.12 16 19 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 20 H -0.04 -2.50 8.04 -2.39 -0.02 -2.52 16 21 H 0.00 0.08 7.22 -2.38 -0.02 0.07 16 22 H 0.34 13.35 8.03 -89.70 -0.72 12.63 16 23 H 0.07 1.68 7.78 -2.39 -0.02 1.66 16 24 H 0.08 1.90 7.21 -2.39 -0.02 1.88 16 25 H 0.06 1.44 6.96 -2.39 -0.02 1.42 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.09 1.72 6.84 -2.39 -0.02 1.70 16 29 H 0.08 2.27 6.86 -2.39 -0.02 2.25 16 30 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.08 2.42 6.94 -2.39 -0.02 2.41 16 32 H 0.06 2.19 7.06 -2.39 -0.02 2.18 16 Total: -1.00 -63.31 261.23 0.78 -62.53 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.38 Total: 14.31 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 2.49 Total: -25.49 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -2.88 Total: -88.60 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.24 Total: -9.06 kcal Total: -63.31 0.78 -62.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857973.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.766 kcal (2) G-P(sol) polarization free energy of solvation -63.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds