Wall clock time and date at job start Mon Mar 30 2020 03:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.57709 * 2 1 4 4 C 1.53096 * 109.68196 * 239.67646 * 2 1 3 5 5 C 1.52582 * 109.95432 * 303.15543 * 4 2 1 6 6 C 1.52582 * 110.72863 * 289.32466 * 5 4 2 7 7 H 1.09005 * 109.30748 * 310.57743 * 6 5 4 8 8 N 1.46902 * 109.39054 * 190.82799 * 6 5 4 9 9 C 1.46898 * 110.99970 * 154.50535 * 8 6 5 10 10 C 1.50706 * 109.47204 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99791 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99447 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00383 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47432 * 90.00036 * 14 12 10 16 16 H 1.48500 * 109.47404 * 210.00098 * 14 12 10 17 17 H 1.48500 * 109.47007 * 329.99952 * 14 12 10 18 18 C 1.53089 * 109.95694 * 70.67501 * 6 5 4 19 19 S 1.81745 * 109.57403 * 120.25610 * 2 1 3 20 20 H 1.09000 * 109.46938 * 300.00556 * 1 2 3 21 21 H 1.09002 * 109.46905 * 60.00021 * 1 2 3 22 22 H 1.09001 * 109.47342 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.39304 * 63.30514 * 4 2 1 24 24 H 1.09004 * 109.39260 * 183.00776 * 4 2 1 25 25 H 1.09004 * 109.22405 * 169.00099 * 5 4 2 26 26 H 1.08996 * 109.19566 * 49.62501 * 5 4 2 27 27 H 1.00895 * 111.00382 * 30.55008 * 8 6 5 28 28 H 1.09003 * 109.47358 * 299.99873 * 9 8 6 29 29 H 1.09005 * 109.47510 * 59.99832 * 9 8 6 30 30 H 0.97006 * 119.99899 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.57771 * 177.17206 * 18 6 5 32 32 H 1.09001 * 109.68295 * 56.84682 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0456 -0.7278 -1.2443 5 6 1.4824 -2.1452 -1.2893 6 6 2.1121 -3.0113 -0.2024 7 1 3.1963 -2.9045 -0.2395 8 7 1.7526 -4.4173 -0.4299 9 6 2.7536 -5.3182 0.1568 10 6 2.3515 -6.7486 -0.0955 11 1 1.4428 -6.9665 -0.6371 12 6 3.1435 -7.7788 0.3651 13 7 2.7922 -9.0270 0.1453 14 14 4.7154 -7.4019 1.3012 15 1 4.4176 -7.3129 2.7533 16 1 5.7044 -8.4840 1.0641 17 1 5.2740 -6.1090 0.8303 18 6 1.6050 -2.5732 1.1740 19 16 2.1389 -0.8628 1.4792 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.7326 -0.1855 -2.1365 24 1 3.1343 -0.7718 -1.2127 25 1 1.6926 -2.5840 -2.2647 26 1 0.4037 -2.1071 -1.1379 27 1 1.6299 -4.6047 -1.4136 28 1 3.7253 -5.1279 -0.2990 29 1 2.8155 -5.1427 1.2308 30 1 3.3496 -9.7519 0.4691 31 1 2.0192 -3.2274 1.9411 32 1 0.5165 -2.6257 1.1980 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642866009.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:02 Heat of formation + Delta-G solvation = -34.692035 kcal Electronic energy + Delta-G solvation = -12756.137577 eV Core-core repulsion = 10648.209928 eV Total energy + Delta-G solvation = -2107.927649 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.24583 -36.36369 -34.62507 -32.08567 -29.76442 -28.61732 -26.00204 -23.62254 -22.30662 -21.04870 -18.96699 -17.79556 -16.75055 -16.66087 -15.89692 -15.58168 -15.31861 -14.68521 -14.50985 -14.11723 -13.96500 -13.68633 -13.32360 -12.91113 -12.69302 -12.62360 -12.39314 -12.06669 -11.93081 -11.62630 -11.47122 -11.34810 -10.84415 -10.57281 -9.26105 -8.70729 -8.33756 -6.38165 0.81877 1.32253 1.32519 1.43700 1.53824 2.30148 3.00231 3.38862 3.70024 3.79533 3.90471 3.98133 4.17886 4.38087 4.48893 4.57270 4.72432 4.73178 4.84390 4.87131 4.97222 5.00029 5.05436 5.10762 5.17661 5.42018 5.49817 5.90424 6.49658 6.59947 6.72191 7.26989 8.82802 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.051445 B = 0.007223 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.140389 B = 3875.640248 C = 4123.116956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 H 0.125 0.875 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.086 3.914 7 H 0.035 0.965 8 N -0.681 5.681 9 C 0.177 3.823 10 C -0.528 4.528 11 H 0.041 0.959 12 C 0.011 3.989 13 N -0.945 5.945 14 Si 0.946 3.054 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.254 1.254 18 C -0.056 4.056 19 S -0.302 6.302 20 H 0.066 0.934 21 H 0.086 0.914 22 H 0.052 0.948 23 H 0.103 0.897 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.342 0.658 28 H -0.015 1.015 29 H 0.019 0.981 30 H 0.268 0.732 31 H 0.080 0.920 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 20.127 -1.820 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 H 0.143 0.857 4 C -0.148 4.148 5 C -0.166 4.166 6 C -0.026 4.026 7 H 0.053 0.947 8 N -0.313 5.313 9 C 0.049 3.951 10 C -0.566 4.566 11 H 0.059 0.941 12 C -0.187 4.187 13 N -0.585 5.585 14 Si 0.769 3.231 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.178 1.178 18 C -0.205 4.205 19 S -0.076 6.076 20 H 0.085 0.915 21 H 0.104 0.896 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.161 0.839 28 H 0.003 0.997 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.244 20.334 -0.354 20.375 hybrid contribution 0.692 -1.115 -0.992 1.645 sum -0.551 19.219 -1.345 19.274 Atomic orbital electron populations 1.22103 0.92269 1.02602 1.03558 1.23305 0.99507 1.01443 0.92688 0.85678 1.21728 1.01029 0.94369 0.97688 1.21751 1.01739 0.95178 0.97926 1.21721 0.97405 0.88873 0.94601 0.94651 1.60350 1.48488 1.01941 1.20541 1.19758 0.89490 0.91132 0.94763 1.21321 1.08582 0.90592 1.36137 0.94096 1.25824 1.01530 0.94573 0.96759 1.70041 1.40492 0.99806 1.48147 0.85733 0.79145 0.78775 0.79417 1.19206 1.20283 1.17764 1.23338 1.03870 0.93156 1.00111 1.86831 1.78599 1.07823 1.34321 0.91524 0.89578 0.92860 0.87887 0.91379 0.90590 0.90015 0.83902 0.99727 0.96260 0.92266 0.90129 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.73 71.98 0.63 -1.80 16 2 C -0.04 -0.77 3.44 30.63 0.11 -0.67 16 3 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.11 -2.01 5.32 30.49 0.16 -1.85 16 5 C -0.13 -3.04 4.86 30.32 0.15 -2.89 16 6 C 0.09 2.74 2.34 44.81 0.10 2.85 16 7 H 0.04 1.23 7.70 -2.38 -0.02 1.21 16 8 N -0.68 -27.41 6.30 -496.12 -3.12 -30.53 16 9 C 0.18 8.58 4.30 85.56 0.37 8.95 16 10 C -0.53 -30.85 9.87 25.60 0.25 -30.60 16 11 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 12 C 0.01 0.65 5.47 84.65 0.46 1.12 16 13 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 14 Si 0.95 44.80 27.47 68.60 1.88 46.68 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 18 C -0.06 -1.75 5.59 72.01 0.40 -1.35 16 19 S -0.30 -8.12 21.75 -56.49 -1.23 -9.35 16 20 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.05 1.04 5.18 -2.39 -0.01 1.03 16 23 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 1.38 8.05 -2.39 -0.02 1.36 16 25 H 0.08 1.73 7.85 -2.39 -0.02 1.71 16 26 H 0.08 1.87 5.84 -2.39 -0.01 1.86 16 27 H 0.34 13.26 8.15 -89.70 -0.73 12.52 16 28 H -0.01 -0.72 7.11 -2.39 -0.02 -0.74 16 29 H 0.02 0.95 6.82 -2.38 -0.02 0.93 16 30 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 31 H 0.08 2.87 7.39 -2.39 -0.02 2.85 16 32 H 0.09 2.71 7.44 -2.39 -0.02 2.69 16 Total: -1.00 -65.24 260.62 0.78 -64.46 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.31 Total: 13.99 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 2.63 Total: -26.24 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -2.82 Total: -89.55 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.23 Total: -9.35 kcal Total: -65.24 0.78 -64.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642866009.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.768 kcal (2) G-P(sol) polarization free energy of solvation -65.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds