Wall clock time and date at job start Mon Mar 30 2020 02:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86803 * 119.99596 * 2 1 4 4 H 1.48491 * 109.47211 * 274.99118 * 3 2 1 5 5 H 1.48502 * 109.47109 * 34.99335 * 3 2 1 6 6 H 1.48505 * 109.46750 * 154.99047 * 3 2 1 7 7 C 1.40024 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99499 * 147.53416 * 7 2 1 9 9 C 1.40933 * 119.99976 * 327.53502 * 7 2 1 10 10 C 1.40990 * 120.09222 * 157.91944 * 9 7 2 11 11 C 1.36151 * 119.90149 * 180.02562 * 10 9 7 12 12 C 1.40187 * 120.09894 * 0.02562 * 11 10 9 13 13 C 1.47274 * 119.90908 * 180.02562 * 12 11 10 14 14 C 1.33087 * 119.99608 * 7.21027 * 13 12 11 15 15 C 1.51565 * 136.68163 * 6.31747 * 14 13 12 16 16 N 1.48111 * 86.44711 * 155.78237 * 15 14 13 17 17 C 1.47827 * 89.29282 * 25.08912 * 16 15 14 18 18 C 1.40189 * 120.19079 * 0.27260 * 12 11 10 19 19 C 1.36165 * 120.09670 * 359.44534 * 18 12 11 20 20 H 0.97000 * 120.00657 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.05077 * 0.02562 * 10 9 7 22 22 H 1.07997 * 119.95107 * 180.02562 * 11 10 9 23 23 H 1.07996 * 120.00427 * 186.93167 * 13 12 11 24 24 H 1.09000 * 113.69826 * 270.14804 * 15 14 13 25 25 H 1.08992 * 113.69833 * 41.32064 * 15 14 13 26 26 H 1.00899 * 111.23579 * 272.77711 * 16 15 14 27 27 H 1.08999 * 113.69983 * 220.50179 * 17 16 15 28 28 H 1.09004 * 113.79273 * 89.33350 * 17 16 15 29 29 H 1.07997 * 119.95369 * 179.70633 * 18 12 11 30 30 H 1.07999 * 120.05119 * 180.25124 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3837 2.1074 -1.3947 5 1 1.4959 2.6200 0.8029 6 1 3.5881 1.4121 0.5919 7 6 2.0080 -1.2126 0.0005 8 1 2.9614 -1.2858 -0.5015 9 6 1.4686 -2.3375 0.6562 10 6 1.8873 -3.6344 0.2951 11 6 1.3632 -4.7184 0.9307 12 6 0.4082 -4.5465 1.9425 13 6 -0.1555 -5.7219 2.6276 14 6 0.3423 -6.9330 2.3897 15 6 1.5096 -7.5130 1.6162 16 7 1.4230 -8.6720 2.5343 17 6 -0.0038 -8.3605 2.7635 18 6 -0.0156 -3.2590 2.3004 19 6 0.5075 -2.1691 1.6739 20 1 -0.4851 0.8400 -0.0004 21 1 2.6227 -3.7679 -0.4845 22 1 1.6837 -5.7122 0.6551 23 1 -0.9699 -5.6006 3.3265 24 1 1.2716 -7.7557 0.5806 25 1 2.4308 -6.9394 1.7180 26 1 1.9657 -8.5170 3.3707 27 1 -0.3168 -8.4781 3.8009 28 1 -0.6787 -8.8465 2.0589 29 1 -0.7550 -3.1312 3.0771 30 1 0.1834 -1.1774 1.9531 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675056374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:05 Heat of formation + Delta-G solvation = 67.978270 kcal Electronic energy + Delta-G solvation = -13292.618150 eV Core-core repulsion = 11053.698667 eV Total energy + Delta-G solvation = -2238.919482 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.05119 -37.45003 -34.14317 -31.68994 -29.71507 -28.55294 -25.84103 -25.19425 -23.32231 -20.94353 -20.38664 -17.65716 -17.51022 -16.06490 -15.41523 -14.85090 -14.31115 -13.92317 -13.27230 -13.00898 -12.63493 -12.32534 -12.15667 -11.98526 -11.63414 -11.37088 -11.12846 -10.96351 -10.65325 -10.22116 -9.64589 -9.45829 -9.34397 -8.78580 -8.43933 -7.64947 -7.25976 -6.97713 -4.42916 2.05048 2.83033 2.95575 3.02389 3.06974 3.50481 3.75498 4.42055 4.47216 4.93802 5.50533 5.60923 5.66588 5.89019 5.95228 6.04742 6.14765 6.22322 6.31901 6.50902 6.77310 6.85800 6.91797 7.04560 7.20757 7.28866 7.50222 7.63893 7.85676 7.90402 8.10691 8.11584 8.43720 8.66846 8.83289 9.82767 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.074714 B = 0.006165 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.671939 B = 4540.321936 C = 4778.237983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.900 3.100 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.453 4.453 8 H 0.085 0.915 9 C 0.122 3.878 10 C -0.239 4.239 11 C -0.063 4.063 12 C -0.224 4.224 13 C -0.012 4.012 14 C -0.295 4.295 15 C 0.063 3.937 16 N -0.658 5.658 17 C 0.063 3.937 18 C -0.068 4.068 19 C -0.189 4.189 20 H 0.287 0.713 21 H 0.093 0.907 22 H 0.101 0.899 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.333 0.667 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -4.227 3.175 5.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.479 4.479 8 H 0.103 0.897 9 C 0.119 3.881 10 C -0.259 4.259 11 C -0.081 4.081 12 C -0.225 4.225 13 C -0.031 4.031 14 C -0.296 4.296 15 C -0.066 4.066 16 N -0.283 5.283 17 C -0.066 4.066 18 C -0.086 4.086 19 C -0.208 4.208 20 H 0.098 0.902 21 H 0.111 0.889 22 H 0.119 0.881 23 H 0.122 0.878 24 H 0.110 0.890 25 H 0.091 0.909 26 H 0.147 0.853 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.235 -4.835 2.670 5.528 hybrid contribution 0.089 1.775 0.541 1.858 sum 0.325 -3.060 3.211 4.447 Atomic orbital electron populations 1.69900 1.08296 1.30412 1.29108 1.26059 0.94426 1.01905 0.91426 0.86425 0.81489 0.80335 0.79434 1.19206 1.19662 1.17894 1.19661 1.05235 0.93796 1.29246 0.89660 1.17669 0.89194 0.91846 0.89349 1.20630 1.07719 0.92673 1.04853 1.20782 0.95093 0.97422 0.94801 1.18127 1.07464 0.91496 1.05374 1.20824 0.95307 0.91184 0.95757 1.24410 1.02488 0.94260 1.08462 1.22788 0.97046 0.89387 0.97357 1.65481 1.04796 1.42607 1.15464 1.22617 0.91988 0.91836 1.00183 1.20512 0.97700 0.92498 0.97914 1.20726 1.03220 0.97109 0.99711 0.90162 0.88900 0.88110 0.87822 0.88956 0.90856 0.85334 0.92057 0.88964 0.89362 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.58 11.77 55.55 0.65 -17.92 16 2 C 0.09 2.04 4.76 -17.33 -0.08 1.96 16 3 Si 0.90 17.43 29.66 -169.99 -5.04 12.39 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.45 -11.55 8.93 -37.89 -0.34 -11.89 16 8 H 0.09 2.08 8.02 -52.49 -0.42 1.66 16 9 C 0.12 3.19 5.57 -106.79 -0.60 2.59 16 10 C -0.24 -5.84 9.73 -39.29 -0.38 -6.22 16 11 C -0.06 -1.42 9.04 -39.60 -0.36 -1.78 16 12 C -0.22 -5.01 5.88 -104.76 -0.62 -5.63 16 13 C -0.01 -0.22 9.90 -37.70 -0.37 -0.59 16 14 C -0.29 -5.11 6.96 -100.40 -0.70 -5.81 16 15 C 0.06 1.03 6.30 -4.61 -0.03 1.00 16 16 N -0.66 -9.81 8.66 -120.94 -1.05 -10.86 16 17 C 0.06 0.92 8.75 -4.77 -0.04 0.88 16 18 C -0.07 -1.58 9.71 -39.59 -0.38 -1.96 16 19 C -0.19 -4.79 8.73 -39.29 -0.34 -5.13 16 20 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 21 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 22 H 0.10 2.03 4.24 -52.49 -0.22 1.81 16 23 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 24 H 0.09 1.48 8.07 -51.93 -0.42 1.07 16 25 H 0.07 1.22 7.15 -51.93 -0.37 0.85 16 26 H 0.33 4.53 8.88 -39.29 -0.35 4.18 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.10 2.67 6.51 -52.49 -0.34 2.33 16 LS Contribution 257.30 15.07 3.88 3.88 Total: -1.00 -26.32 257.30 -9.17 -35.50 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -3.37 Total: 9.60 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -4.24 Total: -32.58 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: -0.39 Total: -28.78 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.04 Total: 12.39 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.32 -9.17 -35.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675056374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.473 kcal (2) G-P(sol) polarization free energy of solvation -26.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds