Wall clock time and date at job start Mon Mar 30 2020 02:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86803 * 119.99596 * 2 1 4 4 H 1.48491 * 109.47211 * 274.99118 * 3 2 1 5 5 H 1.48502 * 109.47109 * 34.99335 * 3 2 1 6 6 H 1.48505 * 109.46750 * 154.99047 * 3 2 1 7 7 C 1.40024 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99499 * 147.53416 * 7 2 1 9 9 C 1.40933 * 119.99976 * 327.53502 * 7 2 1 10 10 C 1.40990 * 120.09222 * 157.91944 * 9 7 2 11 11 C 1.36151 * 119.90149 * 180.02562 * 10 9 7 12 12 C 1.40187 * 120.09894 * 0.02562 * 11 10 9 13 13 C 1.47274 * 119.90908 * 180.02562 * 12 11 10 14 14 C 1.33087 * 119.99608 * 7.21027 * 13 12 11 15 15 C 1.51565 * 136.68163 * 6.31747 * 14 13 12 16 16 N 1.48111 * 86.44711 * 155.78237 * 15 14 13 17 17 C 1.47827 * 89.29282 * 25.08912 * 16 15 14 18 18 C 1.40189 * 120.19079 * 0.27260 * 12 11 10 19 19 C 1.36165 * 120.09670 * 359.44534 * 18 12 11 20 20 H 0.97000 * 120.00657 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.05077 * 0.02562 * 10 9 7 22 22 H 1.07997 * 119.95107 * 180.02562 * 11 10 9 23 23 H 1.07996 * 120.00427 * 186.93167 * 13 12 11 24 24 H 1.09000 * 113.69826 * 270.14804 * 15 14 13 25 25 H 1.08992 * 113.69833 * 41.32064 * 15 14 13 26 26 H 1.00899 * 111.23579 * 272.77711 * 16 15 14 27 27 H 1.08999 * 113.69983 * 220.50179 * 17 16 15 28 28 H 1.09004 * 113.79273 * 89.33350 * 17 16 15 29 29 H 1.07997 * 119.95369 * 179.70633 * 18 12 11 30 30 H 1.07999 * 120.05119 * 180.25124 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3837 2.1074 -1.3947 5 1 1.4959 2.6200 0.8029 6 1 3.5881 1.4121 0.5919 7 6 2.0080 -1.2126 0.0005 8 1 2.9614 -1.2858 -0.5015 9 6 1.4686 -2.3375 0.6562 10 6 1.8873 -3.6344 0.2951 11 6 1.3632 -4.7184 0.9307 12 6 0.4082 -4.5465 1.9425 13 6 -0.1555 -5.7219 2.6276 14 6 0.3423 -6.9330 2.3897 15 6 1.5096 -7.5130 1.6162 16 7 1.4230 -8.6720 2.5343 17 6 -0.0038 -8.3605 2.7635 18 6 -0.0156 -3.2590 2.3004 19 6 0.5075 -2.1691 1.6739 20 1 -0.4851 0.8400 -0.0004 21 1 2.6227 -3.7679 -0.4845 22 1 1.6837 -5.7122 0.6551 23 1 -0.9699 -5.6006 3.3265 24 1 1.2716 -7.7557 0.5806 25 1 2.4308 -6.9394 1.7180 26 1 1.9657 -8.5170 3.3707 27 1 -0.3168 -8.4781 3.8009 28 1 -0.6787 -8.8465 2.0589 29 1 -0.7550 -3.1312 3.0771 30 1 0.1834 -1.1774 1.9531 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675056374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:05 Heat of formation + Delta-G solvation = 52.155874 kcal Electronic energy + Delta-G solvation = -13293.304260 eV Core-core repulsion = 11053.698667 eV Total energy + Delta-G solvation = -2239.605593 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44357 -39.17738 -35.90116 -33.34946 -31.54017 -30.23879 -27.22539 -26.75211 -24.81273 -22.73296 -22.13607 -19.35555 -19.05919 -17.35179 -17.14672 -16.46904 -15.83766 -15.63424 -14.75397 -14.58304 -14.20129 -13.83689 -13.73215 -13.65971 -13.23316 -12.93030 -12.78700 -12.53789 -12.27874 -11.82622 -11.26625 -11.17051 -11.06453 -10.41824 -9.71937 -9.50747 -9.01154 -8.70890 -6.30424 0.42774 1.17385 1.29240 1.37505 1.51702 1.85222 2.14964 2.67585 3.19510 3.55663 3.72468 4.20428 4.37957 4.42675 4.48993 4.67914 4.70432 4.71931 4.94023 4.97704 5.05890 5.17500 5.20507 5.34365 5.46165 5.62361 5.78759 6.03912 6.04570 6.26987 6.30092 6.45935 6.59244 6.80937 6.97751 8.10879 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.074714 B = 0.006165 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.671939 B = 4540.321936 C = 4778.237983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.049 3.951 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.258 1.258 7 C -0.495 4.495 8 H 0.082 0.918 9 C 0.090 3.910 10 C -0.259 4.259 11 C -0.071 4.071 12 C -0.218 4.218 13 C -0.042 4.042 14 C -0.271 4.271 15 C 0.054 3.946 16 N -0.655 5.655 17 C 0.070 3.930 18 C -0.078 4.078 19 C -0.211 4.211 20 H 0.297 0.703 21 H 0.097 0.903 22 H 0.125 0.875 23 H 0.124 0.876 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.342 0.658 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 -5.648 4.005 6.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.171 4.171 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.182 1.182 7 C -0.521 4.521 8 H 0.100 0.900 9 C 0.087 3.913 10 C -0.278 4.278 11 C -0.089 4.089 12 C -0.219 4.219 13 C -0.061 4.061 14 C -0.272 4.272 15 C -0.075 4.075 16 N -0.281 5.281 17 C -0.059 4.059 18 C -0.096 4.096 19 C -0.230 4.230 20 H 0.108 0.892 21 H 0.115 0.885 22 H 0.143 0.857 23 H 0.142 0.858 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.157 0.843 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.060 -6.277 3.504 7.189 hybrid contribution 0.104 1.889 0.360 1.926 sum 0.164 -4.388 3.865 5.850 Atomic orbital electron populations 1.69908 1.09725 1.31858 1.29991 1.26871 0.95063 1.04883 0.90330 0.85302 0.79642 0.75677 0.79859 1.18124 1.18589 1.18167 1.19861 1.05775 0.95272 1.31223 0.90017 1.18010 0.90174 0.92865 0.90203 1.20831 1.08458 0.92915 1.05598 1.21079 0.95073 0.98030 0.94747 1.18545 1.06259 0.92487 1.04646 1.20830 0.97123 0.90528 0.97656 1.24963 1.01340 0.95171 1.05761 1.22902 0.96541 0.89938 0.98091 1.65480 1.05291 1.41553 1.15770 1.22770 0.91979 0.89021 1.02119 1.20802 0.98040 0.92492 0.98257 1.20733 1.04335 0.97274 1.00652 0.89213 0.88519 0.85714 0.85847 0.88292 0.91233 0.84329 0.89641 0.87499 0.87154 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.18 11.77 21.84 0.26 -39.92 16 2 C 0.05 2.42 4.76 85.28 0.41 2.82 16 3 Si 0.98 36.38 29.66 68.60 2.03 38.41 16 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 5 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.49 -26.37 8.93 23.36 0.21 -26.16 16 8 H 0.08 4.21 8.02 -2.91 -0.02 4.18 16 9 C 0.09 4.90 5.57 -21.27 -0.12 4.78 16 10 C -0.26 -12.98 9.73 22.46 0.22 -12.76 16 11 C -0.07 -3.22 9.04 22.26 0.20 -3.02 16 12 C -0.22 -9.63 5.88 -19.95 -0.12 -9.74 16 13 C -0.04 -1.51 9.90 23.49 0.23 -1.28 16 14 C -0.27 -8.47 6.96 -17.02 -0.12 -8.58 16 15 C 0.05 1.60 6.30 85.13 0.54 2.14 16 16 N -0.65 -16.98 8.66 -536.55 -4.65 -21.63 16 17 C 0.07 1.72 8.75 85.18 0.75 2.47 16 18 C -0.08 -3.64 9.71 22.26 0.22 -3.42 16 19 C -0.21 -11.09 8.73 22.46 0.20 -10.89 16 20 H 0.30 13.31 8.30 -92.71 -0.77 12.54 16 21 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 22 H 0.13 4.87 4.24 -2.91 -0.01 4.86 16 23 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 24 H 0.10 2.87 8.07 -2.39 -0.02 2.86 16 25 H 0.07 2.15 7.15 -2.39 -0.02 2.13 16 26 H 0.34 8.01 8.88 -89.69 -0.80 7.22 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.09 4.90 6.51 -2.91 -0.02 4.88 16 Total: -1.00 -57.42 257.30 0.61 -56.82 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.35 Total: 29.97 kcal Atomic # 6 Polarization: -66.26 SS G_CDS: 2.61 Total: -63.66 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -4.39 Total: -61.55 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Total: -57.42 0.61 -56.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675056374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.974 kcal (2) G-P(sol) polarization free energy of solvation -57.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds