Wall clock time and date at job start Mon Mar 30 2020 02:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47490 * 2 1 4 4 C 1.34312 * 126.58359 * 264.97629 * 3 2 1 5 5 N 1.36730 * 109.81026 * 179.97438 * 4 3 2 6 6 H 0.96997 * 124.99566 * 179.97438 * 5 4 3 7 7 C 1.36960 * 110.00365 * 0.02562 * 5 4 3 8 8 C 1.40308 * 107.35402 * 359.97438 * 7 5 4 9 9 C 1.39870 * 120.12032 * 179.97438 * 8 7 5 10 10 C 1.38280 * 120.19594 * 359.97438 * 9 8 7 11 11 C 1.37923 * 120.68705 * 359.82378 * 10 9 8 12 12 C 1.40630 * 120.36314 * 0.41690 * 11 10 9 13 13 C 1.40974 * 120.29818 * 179.82045 * 12 11 10 14 14 H 1.08002 * 119.99732 * 154.28126 * 13 12 11 15 15 C 1.39946 * 120.00193 * 334.56052 * 13 12 11 16 16 N 1.30860 * 119.99935 * 342.74056 * 15 13 12 17 17 Si 1.86803 * 120.00257 * 162.73525 * 15 13 12 18 18 H 1.48503 * 109.46751 * 89.99914 * 17 15 13 19 19 H 1.48500 * 109.47402 * 210.00212 * 17 15 13 20 20 H 1.48502 * 109.46997 * 330.00577 * 17 15 13 21 21 H 1.09002 * 109.47296 * 59.99464 * 1 2 3 22 22 H 1.09004 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47192 * 300.00066 * 1 2 3 24 24 H 1.09000 * 109.47192 * 239.99934 * 2 1 3 25 25 H 1.09002 * 109.47296 * 120.00536 * 2 1 3 26 26 H 1.07998 * 125.09668 * 359.97438 * 4 3 2 27 27 H 1.07996 * 119.90370 * 180.02562 * 9 8 7 28 28 H 1.08006 * 119.65412 * 180.02562 * 10 9 8 29 29 H 1.08001 * 119.81913 * 180.21568 * 11 10 9 30 30 H 0.96994 * 119.99782 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3883 2.1440 -1.0744 5 7 2.7916 3.3899 -0.6813 6 1 3.0954 4.0907 -1.2793 7 6 2.7046 3.5025 0.6808 8 6 2.2261 2.2785 1.1723 9 6 2.0357 2.1001 2.5464 10 6 2.3183 3.1281 3.4270 11 6 2.7935 4.3384 2.9669 12 6 2.9899 4.5480 1.5902 13 6 3.4721 5.7869 1.1211 14 1 4.0058 5.8386 0.1836 15 6 3.2645 6.9487 1.8731 16 7 2.3566 6.9647 2.8154 17 14 4.2834 8.4768 1.5319 18 1 3.5975 9.3117 0.5131 19 1 4.4417 9.2564 2.7858 20 1 5.6208 8.0770 1.0253 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.3601 1.7939 -2.0956 27 1 1.6676 1.1564 2.9209 28 1 2.1684 2.9807 4.4864 29 1 3.0130 5.1305 3.6674 30 1 2.2129 7.7699 3.3368 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685951461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:37 Heat of formation + Delta-G solvation = 32.167744 kcal Electronic energy + Delta-G solvation = -13723.259756 eV Core-core repulsion = 11482.787413 eV Total energy + Delta-G solvation = -2240.472343 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92867 -35.70375 -33.63546 -33.19161 -29.86660 -28.14282 -27.15056 -25.08180 -22.77794 -21.18663 -20.25108 -18.52788 -16.95864 -16.33485 -15.01310 -14.88599 -14.03950 -13.61479 -13.43974 -12.93127 -12.67799 -12.58240 -11.77059 -11.68891 -11.42496 -11.14061 -11.01304 -10.73930 -10.58219 -10.38945 -10.05801 -9.75121 -9.34367 -9.18303 -8.08865 -6.93292 -6.70033 -6.53819 -4.22965 2.54366 3.00850 3.05420 3.10600 3.25664 3.78926 3.92156 4.34630 4.71267 5.53189 5.63717 5.72973 5.79922 5.97531 6.17235 6.29309 6.35573 6.37383 6.62209 6.71843 6.82554 6.99478 7.06982 7.18071 7.40529 7.53846 7.80020 7.90816 8.16879 8.28178 8.33779 8.64784 8.73423 8.88610 9.01264 10.20468 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.045814 B = 0.008633 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.014978 B = 3242.458361 C = 3672.435298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.199 4.199 4 C 0.023 3.977 5 N -0.583 5.583 6 H 0.404 0.596 7 C 0.024 3.976 8 C -0.073 4.073 9 C -0.212 4.212 10 C -0.101 4.101 11 C -0.187 4.187 12 C 0.117 3.883 13 C -0.468 4.468 14 H 0.070 0.930 15 C 0.077 3.923 16 N -0.790 5.790 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.262 1.262 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.148 0.852 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 -5.016 -4.427 6.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.208 4.208 4 C -0.106 4.106 5 N -0.183 5.183 6 H 0.239 0.761 7 C -0.081 4.081 8 C -0.077 4.077 9 C -0.232 4.232 10 C -0.120 4.120 11 C -0.208 4.208 12 C 0.114 3.886 13 C -0.497 4.497 14 H 0.088 0.912 15 C -0.141 4.141 16 N -0.415 5.415 17 Si 0.729 3.271 18 H -0.197 1.197 19 H -0.200 1.200 20 H -0.186 1.186 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.166 0.834 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.137 0.863 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.261 -4.744 -4.329 6.428 hybrid contribution 0.483 1.174 -0.423 1.338 sum 0.222 -3.569 -4.752 5.948 Atomic orbital electron populations 1.21736 0.96278 0.99998 1.02005 1.19658 0.94683 0.92435 1.00758 1.20051 1.12415 0.96246 0.92114 1.21199 1.05605 0.85899 0.97851 1.41266 1.58110 1.12517 1.06439 0.76131 1.18619 1.09216 0.97878 0.82393 1.18711 1.03574 0.92794 0.92611 1.19706 1.13926 0.98541 0.91057 1.20495 1.00548 0.94117 0.96867 1.20838 1.08965 0.96663 0.94350 1.16732 0.91700 0.89929 0.90276 1.19280 1.32587 0.91648 1.06224 0.91205 1.25808 0.93791 1.00422 0.94035 1.69849 1.24818 1.29519 1.17283 0.86374 0.81124 0.80801 0.78773 1.19652 1.19998 1.18611 0.93293 0.93764 0.92578 0.92775 0.92174 0.83430 0.89594 0.89437 0.86332 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.89 37.15 0.37 -1.75 16 2 C -0.04 -0.60 6.47 -27.89 -0.18 -0.78 16 3 C -0.20 -4.02 5.58 -102.66 -0.57 -4.59 16 4 C 0.02 0.43 11.74 -16.75 -0.20 0.23 16 5 N -0.58 -12.22 6.03 -10.33 -0.06 -12.28 16 6 H 0.40 7.46 8.96 -40.82 -0.37 7.09 16 7 C 0.02 0.61 7.00 -83.57 -0.58 0.03 16 8 C -0.07 -1.76 6.35 -105.16 -0.67 -2.43 16 9 C -0.21 -5.08 10.11 -38.96 -0.39 -5.47 16 10 C -0.10 -2.49 10.00 -39.68 -0.40 -2.89 16 11 C -0.19 -5.00 8.67 -38.80 -0.34 -5.34 16 12 C 0.12 3.17 5.57 -106.73 -0.59 2.58 16 13 C -0.47 -12.32 9.04 -37.91 -0.34 -12.66 16 14 H 0.07 1.74 7.90 -52.49 -0.41 1.32 16 15 C 0.08 1.94 5.14 -17.33 -0.09 1.85 16 16 N -0.79 -20.57 10.98 55.55 0.61 -19.96 16 17 Si 0.90 18.61 29.59 -169.99 -5.03 13.58 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.15 2.12 8.06 -52.49 -0.42 1.69 16 27 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 29 H 0.12 3.25 6.18 -52.49 -0.32 2.92 16 30 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 259.71 15.07 3.91 3.91 Total: -1.00 -28.94 259.71 -8.18 -37.12 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.62 Total: 8.84 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: -3.99 Total: -31.21 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.55 Total: -32.24 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.94 -8.18 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685951461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.285 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds