Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47490 * 2 1 4 4 C 1.34312 * 126.58359 * 264.97629 * 3 2 1 5 5 N 1.36730 * 109.81026 * 179.97438 * 4 3 2 6 6 H 0.96997 * 124.99566 * 179.97438 * 5 4 3 7 7 C 1.36960 * 110.00365 * 0.02562 * 5 4 3 8 8 C 1.40308 * 107.35402 * 359.97438 * 7 5 4 9 9 C 1.39870 * 120.12032 * 179.97438 * 8 7 5 10 10 C 1.38280 * 120.19594 * 359.97438 * 9 8 7 11 11 C 1.37923 * 120.68705 * 359.82378 * 10 9 8 12 12 C 1.40630 * 120.36314 * 0.41690 * 11 10 9 13 13 C 1.40974 * 120.29818 * 179.82045 * 12 11 10 14 14 H 1.08002 * 119.99732 * 154.28126 * 13 12 11 15 15 C 1.39946 * 120.00193 * 334.56052 * 13 12 11 16 16 N 1.30860 * 119.99935 * 342.74056 * 15 13 12 17 17 Si 1.86803 * 120.00257 * 162.73525 * 15 13 12 18 18 H 1.48503 * 109.46751 * 89.99914 * 17 15 13 19 19 H 1.48500 * 109.47402 * 210.00212 * 17 15 13 20 20 H 1.48502 * 109.46997 * 330.00577 * 17 15 13 21 21 H 1.09002 * 109.47296 * 59.99464 * 1 2 3 22 22 H 1.09004 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47192 * 300.00066 * 1 2 3 24 24 H 1.09000 * 109.47192 * 239.99934 * 2 1 3 25 25 H 1.09002 * 109.47296 * 120.00536 * 2 1 3 26 26 H 1.07998 * 125.09668 * 359.97438 * 4 3 2 27 27 H 1.07996 * 119.90370 * 180.02562 * 9 8 7 28 28 H 1.08006 * 119.65412 * 180.02562 * 10 9 8 29 29 H 1.08001 * 119.81913 * 180.21568 * 11 10 9 30 30 H 0.96994 * 119.99782 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3883 2.1440 -1.0744 5 7 2.7916 3.3899 -0.6813 6 1 3.0954 4.0907 -1.2793 7 6 2.7046 3.5025 0.6808 8 6 2.2261 2.2785 1.1723 9 6 2.0357 2.1001 2.5464 10 6 2.3183 3.1281 3.4270 11 6 2.7935 4.3384 2.9669 12 6 2.9899 4.5480 1.5902 13 6 3.4721 5.7869 1.1211 14 1 4.0058 5.8386 0.1836 15 6 3.2645 6.9487 1.8731 16 7 2.3566 6.9647 2.8154 17 14 4.2834 8.4768 1.5319 18 1 3.5975 9.3117 0.5131 19 1 4.4417 9.2564 2.7858 20 1 5.6208 8.0770 1.0253 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.3601 1.7939 -2.0956 27 1 1.6676 1.1564 2.9209 28 1 2.1684 2.9807 4.4864 29 1 3.0130 5.1305 3.6674 30 1 2.2129 7.7699 3.3368 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685951461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 16.444448 kcal Electronic energy + Delta-G solvation = -13723.941570 eV Core-core repulsion = 11482.787413 eV Total energy + Delta-G solvation = -2241.154156 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.62847 -37.53627 -35.38481 -34.71185 -31.66220 -29.91431 -28.76141 -27.00844 -24.08115 -23.00557 -22.10560 -20.20852 -18.63682 -18.17901 -16.82477 -16.56956 -15.72283 -15.11371 -14.98461 -14.50314 -14.37603 -14.25937 -13.46095 -13.22828 -12.98519 -12.77926 -12.69906 -12.24775 -12.13603 -11.90710 -11.82045 -11.48643 -11.13839 -11.05234 -9.87045 -8.80702 -8.56050 -8.28528 -6.20295 0.76883 1.31978 1.35941 1.42702 1.50950 2.11287 2.19969 2.75391 2.83053 3.77954 4.17520 4.36801 4.44465 4.53993 4.73752 4.77058 4.87943 4.99972 5.06613 5.17133 5.19268 5.36118 5.51586 5.54481 5.61874 5.66598 5.94444 6.11493 6.29413 6.37952 6.48612 6.78379 6.87613 7.08638 7.16446 8.35453 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.045814 B = 0.008633 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.014978 B = 3242.458361 C = 3672.435298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.035 4.035 3 C -0.214 4.214 4 C 0.042 3.958 5 N -0.582 5.582 6 H 0.414 0.586 7 C -0.005 4.005 8 C -0.098 4.098 9 C -0.215 4.215 10 C -0.114 4.114 11 C -0.217 4.217 12 C 0.088 3.912 13 C -0.498 4.498 14 H 0.074 0.926 15 C 0.034 3.966 16 N -0.825 5.825 17 Si 0.982 3.018 18 H -0.262 1.262 19 H -0.268 1.268 20 H -0.260 1.260 21 H 0.052 0.948 22 H 0.072 0.928 23 H 0.030 0.970 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.201 0.799 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -5.953 -6.397 8.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.222 4.222 4 C -0.086 4.086 5 N -0.183 5.183 6 H 0.250 0.750 7 C -0.111 4.111 8 C -0.102 4.102 9 C -0.236 4.236 10 C -0.133 4.133 11 C -0.239 4.239 12 C 0.085 3.915 13 C -0.528 4.528 14 H 0.093 0.907 15 C -0.181 4.181 16 N -0.451 5.451 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.183 1.183 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.218 0.782 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.185 -5.700 -6.312 8.507 hybrid contribution 0.406 1.340 0.139 1.407 sum 0.221 -4.360 -6.173 7.561 Atomic orbital electron populations 1.21696 0.95358 1.01583 1.00969 1.19749 0.95374 0.90007 1.02162 1.20542 1.12906 0.98076 0.90720 1.22042 1.02471 0.84217 0.99914 1.41361 1.57986 1.13871 1.05121 0.74999 1.18767 1.10098 0.97976 0.84273 1.19286 1.03400 0.93729 0.93819 1.20019 1.13106 0.98991 0.91437 1.20722 1.00622 0.93801 0.98171 1.20820 1.11301 0.97232 0.94528 1.17081 0.92342 0.91155 0.90933 1.19555 1.33747 0.92333 1.07116 0.90745 1.26720 0.94404 1.03476 0.93462 1.69924 1.26082 1.30806 1.18242 0.85217 0.79143 0.76482 0.78910 1.18634 1.19234 1.18336 0.92852 0.90892 0.95091 0.89532 0.92596 0.78176 0.87555 0.87573 0.88149 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.89 71.98 0.71 -2.97 16 2 C -0.04 -1.02 6.47 29.85 0.19 -0.82 16 3 C -0.21 -8.13 5.58 -18.59 -0.10 -8.23 16 4 C 0.04 1.42 11.74 83.03 0.98 2.39 16 5 N -0.58 -23.66 6.03 -186.61 -1.12 -24.79 16 6 H 0.41 14.79 8.96 -92.71 -0.83 13.96 16 7 C 0.00 -0.25 7.00 39.64 0.28 0.03 16 8 C -0.10 -4.69 6.35 -20.21 -0.13 -4.82 16 9 C -0.22 -10.41 10.11 22.68 0.23 -10.18 16 10 C -0.11 -5.80 10.00 22.20 0.22 -5.58 16 11 C -0.22 -12.21 8.67 22.78 0.20 -12.01 16 12 C 0.09 4.97 5.57 -21.23 -0.12 4.85 16 13 C -0.50 -26.99 9.04 23.35 0.21 -26.78 16 14 H 0.07 3.79 7.90 -2.91 -0.02 3.76 16 15 C 0.03 1.74 5.14 85.25 0.44 2.18 16 16 N -0.82 -44.42 10.98 21.83 0.24 -44.18 16 17 Si 0.98 38.52 29.59 68.60 2.03 40.55 16 18 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 21 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.20 4.59 8.06 -2.91 -0.02 4.57 16 27 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 28 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 29 H 0.10 5.85 6.18 -2.91 -0.02 5.84 16 30 H 0.29 13.95 8.30 -92.71 -0.77 13.19 16 Total: -1.00 -64.71 259.71 4.56 -60.14 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.31 Total: 30.23 kcal Atomic # 6 Polarization: -65.06 SS G_CDS: 3.11 Total: -61.96 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.89 Total: -68.96 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -64.71 4.56 -60.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685951461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.589 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds