Wall clock time and date at job start Mon Mar 30 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48498 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47348 * 299.99953 * 3 2 1 6 6 H 1.48504 * 109.46832 * 59.99761 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47209 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47317 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47328 * 184.32027 * 11 10 9 13 13 C 1.46424 * 110.99926 * 66.31871 * 12 11 10 14 14 C 1.52652 * 110.85211 * 162.90525 * 13 12 11 15 15 C 1.53273 * 109.70108 * 70.09840 * 14 13 12 16 16 S 1.81863 * 108.50427 * 299.07117 * 15 14 13 17 17 C 1.47038 * 111.00337 * 301.52559 * 12 11 10 18 18 H 0.96993 * 119.99804 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47811 * 59.99838 * 9 7 2 20 20 H 1.09009 * 109.47358 * 299.99793 * 9 7 2 21 21 H 1.08999 * 109.46573 * 299.99994 * 10 9 7 22 22 H 1.08997 * 109.47212 * 59.99835 * 10 9 7 23 23 H 1.09006 * 109.46888 * 304.32075 * 11 10 9 24 24 H 1.09003 * 109.47204 * 64.31930 * 11 10 9 25 25 H 1.09002 * 109.20181 * 283.25709 * 13 12 11 26 26 H 1.09000 * 109.20518 * 42.59674 * 13 12 11 27 27 H 1.09001 * 109.44018 * 190.17245 * 14 13 12 28 28 H 1.09005 * 109.43121 * 310.07338 * 14 13 12 29 29 H 1.08993 * 109.63110 * 58.77536 * 15 14 13 30 30 H 1.09001 * 109.62919 * 179.17113 * 15 14 13 31 31 H 1.08995 * 109.59714 * 308.62456 * 17 12 11 32 32 H 1.09008 * 109.59655 * 69.09737 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0012 12 7 2.4314 -6.1016 0.1067 13 6 3.1049 -6.0954 1.4069 14 6 3.7569 -7.4468 1.6876 15 6 4.9582 -7.6443 0.7564 16 16 4.3665 -7.6156 -0.9631 17 6 3.3952 -6.0790 -1.0035 18 1 -0.4849 0.8400 -0.0004 19 1 0.6247 -2.5572 -0.8896 20 1 0.6241 -2.5567 0.8904 21 1 2.8726 -3.6047 -0.8877 22 1 2.8713 -3.6040 0.8922 23 1 0.7959 -5.0119 0.8492 24 1 0.9140 -5.0792 -0.9256 25 1 3.8712 -5.3201 1.4100 26 1 2.3752 -5.8811 2.1877 27 1 4.0924 -7.4794 2.7242 28 1 3.0314 -8.2421 1.5161 29 1 5.6767 -6.8392 0.9099 30 1 5.4317 -8.6030 0.9678 31 1 2.8603 -6.0092 -1.9506 32 1 4.0605 -5.2227 -0.8927 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685967876.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:50 Heat of formation + Delta-G solvation = -15.881303 kcal Electronic energy + Delta-G solvation = -12586.292723 eV Core-core repulsion = 10479.180769 eV Total energy + Delta-G solvation = -2107.111955 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.37792 -34.28445 -32.93707 -30.87361 -27.64150 -26.84281 -24.53443 -22.44320 -21.20291 -19.72223 -16.95876 -16.30914 -15.51493 -14.83253 -14.60388 -14.35725 -14.07045 -13.85623 -13.24836 -12.99451 -12.37978 -12.05575 -11.59636 -11.31127 -11.24276 -10.99946 -10.81459 -10.70286 -10.53984 -9.88008 -9.73268 -9.56357 -9.21855 -8.39746 -8.07229 -7.64775 -6.04291 -4.07229 1.79983 2.47980 3.27454 3.35116 3.38957 4.00870 4.42095 4.68584 4.77368 5.18398 5.24585 5.30574 5.31461 5.47006 5.50616 5.61737 5.71192 5.87887 5.88491 6.11688 6.17610 6.45632 6.64203 6.90669 7.08311 7.21222 7.60907 7.74422 7.94603 8.37482 8.99746 9.57307 11.06784 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.053665 B = 0.005821 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.626686 B = 4809.292142 C = 4886.075107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.145 4.145 11 C 0.054 3.946 12 N -0.535 5.535 13 C 0.042 3.958 14 C -0.117 4.117 15 C -0.082 4.082 16 S -0.264 6.264 17 C 0.100 3.900 18 H 0.260 0.740 19 H 0.017 0.983 20 H 0.016 0.984 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 -13.519 1.953 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.184 4.184 11 C -0.076 4.076 12 N -0.258 5.258 13 C -0.087 4.087 14 C -0.156 4.156 15 C -0.231 4.231 16 S -0.037 6.037 17 C -0.139 4.139 18 H 0.070 0.930 19 H 0.035 0.965 20 H 0.034 0.966 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.023 -14.607 1.082 16.243 hybrid contribution 0.664 2.662 0.998 2.920 sum 7.686 -11.945 2.081 14.356 Atomic orbital electron populations 1.69970 1.06037 1.26544 1.50830 1.25025 0.94849 0.99265 0.95277 0.86555 0.80081 0.83834 0.77660 1.19817 1.20921 1.20956 1.21274 0.92947 0.91155 1.50618 0.92871 1.19024 0.93820 0.91170 0.97291 1.22251 1.00026 0.95887 1.00211 1.22455 0.94295 0.87927 1.02880 1.62381 1.16990 1.45318 1.01153 1.22071 0.98316 0.96213 0.92054 1.21800 0.96374 0.98797 0.98651 1.23458 1.00257 1.05544 0.93808 1.86734 1.64039 1.36338 1.16608 1.23968 0.96462 0.94780 0.98672 0.93002 0.96470 0.96561 0.93317 0.93428 0.90548 0.90647 0.94110 0.89842 0.90668 0.89831 0.90177 0.88055 0.86979 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.14 -2.89 4.45 -26.73 -0.12 -3.01 16 11 C 0.05 0.90 5.31 -3.83 -0.02 0.88 16 12 N -0.53 -7.95 4.75 -239.41 -1.14 -9.09 16 13 C 0.04 0.56 4.55 -4.26 -0.02 0.54 16 14 C -0.12 -1.27 5.94 -26.77 -0.16 -1.43 16 15 C -0.08 -0.89 6.52 37.30 0.24 -0.64 16 16 S -0.26 -3.52 22.50 -107.50 -2.42 -5.94 16 17 C 0.10 1.44 5.30 60.14 0.32 1.76 16 18 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 19 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 20 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 21 H 0.05 0.97 6.84 -51.93 -0.35 0.62 16 22 H 0.05 0.95 6.76 -51.93 -0.35 0.60 16 23 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.04 0.58 7.04 -51.93 -0.37 0.21 16 26 H 0.08 1.10 7.81 -51.93 -0.41 0.69 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.11 1.59 8.10 -51.93 -0.42 1.17 16 32 H 0.06 0.96 6.82 -51.92 -0.35 0.60 16 LS Contribution 267.34 15.07 4.03 4.03 Total: -1.00 -29.66 267.34 -9.28 -38.94 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -5.16 Total: -3.52 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -0.31 Total: -14.94 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.40 Total: -35.18 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.42 Total: -5.94 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.66 -9.28 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685967876.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.058 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds