Wall clock time and date at job start Mon Mar 30 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 C 1.52997 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.38778 * 303.59618 * 4 3 2 6 6 S 1.83553 * 110.33871 * 65.81872 * 4 3 2 7 7 C 1.84228 * 94.92593 * 137.46128 * 6 4 3 8 8 C 1.55385 * 99.83288 * 326.72135 * 7 6 4 9 9 N 1.46552 * 109.49282 * 40.42523 * 8 7 6 10 10 C 1.46901 * 110.99956 * 202.37800 * 9 8 7 11 11 C 1.50699 * 109.47237 * 300.33035 * 10 9 8 12 12 H 1.08003 * 119.99918 * 0.02562 * 11 10 9 13 13 C 1.37869 * 119.99943 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00465 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99899 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47302 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47209 * 300.00105 * 15 13 11 18 18 H 1.48499 * 109.47237 * 60.00057 * 15 13 11 19 19 H 1.09000 * 109.47193 * 300.00114 * 1 2 3 20 20 H 1.09008 * 109.46852 * 59.99475 * 1 2 3 21 21 H 1.08989 * 109.47397 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47193 * 239.99886 * 2 1 3 23 23 H 1.08998 * 109.47132 * 119.99797 * 2 1 3 24 24 H 1.09000 * 109.47141 * 59.99854 * 3 2 1 25 25 H 1.08998 * 109.47607 * 300.00213 * 3 2 1 26 26 H 1.09004 * 111.32818 * 84.37004 * 7 6 4 27 27 H 1.09000 * 111.33294 * 209.01793 * 7 6 4 28 28 H 1.08999 * 109.47071 * 280.40723 * 8 7 6 29 29 H 1.08998 * 109.47331 * 160.45152 * 8 7 6 30 30 H 1.08995 * 109.46884 * 180.32779 * 10 9 8 31 31 H 1.09001 * 109.46574 * 60.32928 * 10 9 8 32 32 H 0.96993 * 120.00315 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9493 0.8772 0.8519 6 16 4.2086 0.7372 -1.5691 7 6 5.5318 2.0010 -1.7835 8 6 4.8223 3.2361 -1.1625 9 7 4.0825 2.8248 0.0339 10 6 3.0076 3.7776 0.3416 11 6 3.5991 5.1435 0.5769 12 1 4.6668 5.2893 0.5046 13 6 2.7773 6.2072 0.8834 14 7 1.4771 6.0298 0.9708 15 14 3.5105 7.9005 1.1744 16 1 2.4239 8.8637 1.4855 17 1 4.4592 7.8397 2.3153 18 1 4.2314 8.3441 -0.0458 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8900 21 1 -0.3633 -1.0275 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8899 26 1 6.4283 1.7354 -1.2232 27 1 5.7596 2.1617 -2.8372 28 1 4.1302 3.6611 -1.8895 29 1 5.5669 3.9841 -0.8903 30 1 2.4785 3.4516 1.2370 31 1 2.3113 3.8226 -0.4959 32 1 0.8989 6.7782 1.1861 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685968039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:38 Heat of formation + Delta-G solvation = -5.576776 kcal Electronic energy + Delta-G solvation = -12920.524711 eV Core-core repulsion = 10813.859594 eV Total energy + Delta-G solvation = -2106.665117 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.74406 -34.41636 -32.72343 -30.45487 -28.48052 -26.05424 -23.51328 -22.90760 -20.96635 -19.26986 -16.61019 -16.45154 -15.14752 -14.78725 -14.69779 -14.16713 -13.62036 -13.18829 -12.68316 -12.48057 -12.22490 -11.73322 -11.56658 -11.19235 -11.08939 -10.83803 -10.79680 -10.61881 -10.57535 -10.29517 -10.10401 -9.43198 -9.18026 -8.50044 -7.44913 -7.27331 -6.09603 -4.12097 2.23730 2.65295 3.29081 3.33689 3.36052 4.33379 4.61048 5.06843 5.15932 5.27183 5.32761 5.38680 5.48290 5.72812 5.76408 5.86118 6.06521 6.12459 6.18649 6.34110 6.39794 6.43806 6.56764 6.70817 7.10397 7.25925 7.66168 7.91961 8.00638 8.39947 8.93808 9.52477 11.00796 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.009646 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.025882 B = 2902.092372 C = 3699.752149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.129 4.129 4 C 0.161 3.839 5 H 0.095 0.905 6 S -0.350 6.350 7 C -0.066 4.066 8 C 0.072 3.928 9 N -0.552 5.552 10 C 0.197 3.803 11 C -0.516 4.516 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.287 1.287 17 H -0.276 1.276 18 H -0.277 1.277 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.000 1.000 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -8.348 -3.111 9.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.169 4.169 4 C -0.056 4.056 5 H 0.113 0.887 6 S -0.125 6.125 7 C -0.215 4.215 8 C -0.057 4.057 9 N -0.278 5.278 10 C 0.072 3.928 11 C -0.555 4.555 12 H 0.080 0.920 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.213 1.213 17 H -0.201 1.201 18 H -0.203 1.203 19 H 0.074 0.926 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.018 0.982 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.333 -9.201 -3.386 10.078 hybrid contribution 0.122 1.865 0.202 1.880 sum 2.455 -7.336 -3.184 8.365 Atomic orbital electron populations 1.21730 0.95838 1.00927 1.02095 1.21521 0.95894 0.96876 1.01675 1.22223 0.93277 0.97005 1.04358 1.24635 0.96243 0.91756 0.93002 0.88713 1.87757 1.42829 1.45503 1.36451 1.24620 0.98111 0.94759 1.03980 1.22731 0.97190 0.95158 0.90599 1.61525 1.30492 1.00235 1.35539 1.19889 0.87588 0.89285 0.95991 1.21153 0.93857 0.92567 1.47927 0.92010 1.24966 0.94792 0.99211 0.95376 1.69933 1.02963 1.31875 1.48650 0.86556 0.78634 0.83444 0.78771 1.21273 1.20135 1.20255 0.92575 0.92773 0.93224 0.91992 0.92281 0.89165 0.90813 0.89170 0.87929 0.93271 0.89129 0.94389 0.98194 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.81 5.78 -26.73 -0.15 -1.96 16 3 C -0.13 -2.32 3.55 -26.73 -0.10 -2.42 16 4 C 0.16 3.00 3.88 -3.51 -0.01 2.99 16 5 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 6 S -0.35 -6.05 21.70 -107.50 -2.33 -8.38 16 7 C -0.07 -1.03 7.71 38.42 0.30 -0.73 16 8 C 0.07 1.38 5.41 -2.75 -0.01 1.37 16 9 N -0.55 -11.74 4.79 -229.53 -1.10 -12.84 16 10 C 0.20 4.94 3.49 -4.98 -0.02 4.92 16 11 C -0.52 -14.06 8.64 -34.44 -0.30 -14.36 16 12 H 0.06 1.65 6.89 -52.48 -0.36 1.29 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 15 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 20 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 21 H 0.05 0.57 8.14 -51.94 -0.42 0.15 16 22 H 0.06 0.94 7.24 -51.93 -0.38 0.56 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.09 1.76 6.22 -51.93 -0.32 1.43 16 25 H 0.07 1.45 7.30 -51.93 -0.38 1.08 16 26 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.05 1.01 7.84 -51.93 -0.41 0.60 16 29 H 0.09 1.73 7.33 -51.93 -0.38 1.35 16 30 H 0.04 1.01 6.44 -51.93 -0.33 0.68 16 31 H 0.00 0.01 6.96 -51.93 -0.36 -0.35 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 266.01 15.07 4.01 4.01 Total: -1.00 -28.26 266.01 -8.75 -37.01 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.02 Total: -0.53 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.03 Total: -10.29 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.36 Total: -37.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -6.05 SS G_CDS: -2.33 Total: -8.38 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.26 -8.75 -37.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.435 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds