Wall clock time and date at job start Mon Mar 30 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 C 1.52997 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.38778 * 303.59618 * 4 3 2 6 6 S 1.83553 * 110.33871 * 65.81872 * 4 3 2 7 7 C 1.84228 * 94.92593 * 137.46128 * 6 4 3 8 8 C 1.55385 * 99.83288 * 326.72135 * 7 6 4 9 9 N 1.46552 * 109.49282 * 40.42523 * 8 7 6 10 10 C 1.46901 * 110.99956 * 202.37800 * 9 8 7 11 11 C 1.50699 * 109.47237 * 300.33035 * 10 9 8 12 12 H 1.08003 * 119.99918 * 0.02562 * 11 10 9 13 13 C 1.37869 * 119.99943 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00465 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99899 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47302 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47209 * 300.00105 * 15 13 11 18 18 H 1.48499 * 109.47237 * 60.00057 * 15 13 11 19 19 H 1.09000 * 109.47193 * 300.00114 * 1 2 3 20 20 H 1.09008 * 109.46852 * 59.99475 * 1 2 3 21 21 H 1.08989 * 109.47397 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47193 * 239.99886 * 2 1 3 23 23 H 1.08998 * 109.47132 * 119.99797 * 2 1 3 24 24 H 1.09000 * 109.47141 * 59.99854 * 3 2 1 25 25 H 1.08998 * 109.47607 * 300.00213 * 3 2 1 26 26 H 1.09004 * 111.32818 * 84.37004 * 7 6 4 27 27 H 1.09000 * 111.33294 * 209.01793 * 7 6 4 28 28 H 1.08999 * 109.47071 * 280.40723 * 8 7 6 29 29 H 1.08998 * 109.47331 * 160.45152 * 8 7 6 30 30 H 1.08995 * 109.46884 * 180.32779 * 10 9 8 31 31 H 1.09001 * 109.46574 * 60.32928 * 10 9 8 32 32 H 0.96993 * 120.00315 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9493 0.8772 0.8519 6 16 4.2086 0.7372 -1.5691 7 6 5.5318 2.0010 -1.7835 8 6 4.8223 3.2361 -1.1625 9 7 4.0825 2.8248 0.0339 10 6 3.0076 3.7776 0.3416 11 6 3.5991 5.1435 0.5769 12 1 4.6668 5.2893 0.5046 13 6 2.7773 6.2072 0.8834 14 7 1.4771 6.0298 0.9708 15 14 3.5105 7.9005 1.1744 16 1 2.4239 8.8637 1.4855 17 1 4.4592 7.8397 2.3153 18 1 4.2314 8.3441 -0.0458 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8900 21 1 -0.3633 -1.0275 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8899 26 1 6.4283 1.7354 -1.2232 27 1 5.7596 2.1617 -2.8372 28 1 4.1302 3.6611 -1.8895 29 1 5.5669 3.9841 -0.8903 30 1 2.4785 3.4516 1.2370 31 1 2.3113 3.8226 -0.4959 32 1 0.8989 6.7782 1.1861 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685968039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:38 Heat of formation + Delta-G solvation = -22.819250 kcal Electronic energy + Delta-G solvation = -12921.272401 eV Core-core repulsion = 10813.859594 eV Total energy + Delta-G solvation = -2107.412807 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.38468 -35.80154 -34.77112 -31.91801 -30.18727 -27.75355 -25.16817 -24.57978 -22.29619 -20.95987 -18.47537 -18.09195 -16.83655 -16.37630 -16.23907 -15.86834 -15.02857 -14.71527 -14.27409 -13.97389 -13.82200 -13.24290 -13.14367 -12.91009 -12.58085 -12.51993 -12.41578 -12.22193 -12.03289 -11.83788 -11.69023 -11.26973 -10.88038 -10.60463 -9.05158 -8.79999 -8.21414 -6.32162 0.82748 1.24695 1.41591 1.43967 1.51788 2.38676 2.95711 3.11868 3.64791 3.76467 3.98705 4.12219 4.18656 4.39119 4.50884 4.57994 4.72552 4.79766 4.83973 4.87855 4.98930 5.09755 5.20389 5.22281 5.29105 5.40210 5.60076 5.96894 6.10613 6.46796 6.82046 7.37399 8.88908 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.009646 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.025882 B = 2902.092372 C = 3699.752149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.120 4.120 4 C 0.154 3.846 5 H 0.104 0.896 6 S -0.343 6.343 7 C -0.051 4.051 8 C 0.069 3.931 9 N -0.561 5.561 10 C 0.219 3.781 11 C -0.533 4.533 12 H 0.064 0.936 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.967 3.033 16 H -0.284 1.284 17 H -0.269 1.269 18 H -0.267 1.267 19 H 0.051 0.949 20 H 0.046 0.954 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.131 0.869 28 H 0.028 0.972 29 H 0.091 0.909 30 H 0.015 0.985 31 H -0.030 1.030 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.861 -8.826 -3.448 10.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.159 4.159 4 C -0.063 4.063 5 H 0.122 0.878 6 S -0.119 6.119 7 C -0.199 4.199 8 C -0.060 4.060 9 N -0.287 5.287 10 C 0.093 3.907 11 C -0.571 4.571 12 H 0.083 0.917 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.792 3.208 16 H -0.210 1.210 17 H -0.194 1.194 18 H -0.192 1.192 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.093 0.907 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.129 0.871 27 H 0.150 0.850 28 H 0.047 0.953 29 H 0.109 0.891 30 H 0.033 0.967 31 H -0.012 1.012 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.698 -9.701 -3.734 11.033 hybrid contribution -0.283 1.968 0.279 2.007 sum 3.415 -7.733 -3.454 9.132 Atomic orbital electron populations 1.21722 0.94730 1.02400 1.01565 1.21462 0.96846 0.94404 1.02353 1.22071 0.93110 0.98823 1.01944 1.24649 0.96590 0.90514 0.94571 0.87803 1.87727 1.43582 1.45440 1.35103 1.24695 0.97599 0.91820 1.05799 1.22731 0.96734 0.97010 0.89502 1.61436 1.29290 1.00839 1.37095 1.19431 0.87793 0.89698 0.93757 1.21507 0.94097 0.93726 1.47804 0.91746 1.25865 0.95120 1.03328 0.94974 1.70065 1.04343 1.33092 1.49476 0.85468 0.77918 0.78400 0.79037 1.20962 1.19352 1.19216 0.93010 0.93478 0.90693 0.91830 0.90881 0.91458 0.93340 0.87100 0.85040 0.95346 0.89122 0.96703 1.01215 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.11 -3.26 5.78 30.59 0.18 -3.08 16 3 C -0.12 -4.43 3.55 30.59 0.11 -4.32 16 4 C 0.15 5.71 3.88 86.19 0.33 6.04 16 5 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 6 S -0.34 -11.26 21.70 -56.49 -1.23 -12.49 16 7 C -0.05 -1.45 7.71 72.80 0.56 -0.89 16 8 C 0.07 2.60 5.41 87.19 0.47 3.07 16 9 N -0.56 -24.04 4.79 -880.09 -4.22 -28.26 16 10 C 0.22 11.40 3.49 85.56 0.30 11.70 16 11 C -0.53 -29.47 8.64 25.60 0.22 -29.25 16 12 H 0.06 3.45 6.89 -2.91 -0.02 3.43 16 13 C 0.01 0.33 5.46 84.65 0.46 0.79 16 14 N -0.93 -54.92 13.29 21.44 0.28 -54.63 16 15 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 20 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 21 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.06 1.84 7.24 -2.39 -0.02 1.82 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 2.77 6.22 -2.39 -0.01 2.75 16 25 H 0.05 2.00 7.30 -2.39 -0.02 1.99 16 26 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 27 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.03 1.18 7.84 -2.39 -0.02 1.16 16 29 H 0.09 3.38 7.33 -2.39 -0.02 3.36 16 30 H 0.02 0.84 6.44 -2.39 -0.02 0.82 16 31 H -0.03 -1.70 6.96 -2.39 -0.02 -1.72 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -60.75 266.01 1.29 -59.46 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.08 Total: 9.58 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 3.35 Total: -19.07 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.93 Total: -82.89 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -11.26 SS G_CDS: -1.23 Total: -12.49 kcal Total: -60.75 1.29 -59.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.636 kcal (2) G-P(sol) polarization free energy of solvation -60.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds