Wall clock time and date at job start Mon Mar 30 2020 03:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.34280 * 2 1 4 4 C 1.53252 * 109.40526 * 240.20150 * 2 1 3 5 5 S 1.81903 * 108.50456 * 301.88531 * 4 2 1 6 6 C 1.81901 * 101.91317 * 308.69446 * 5 4 2 7 7 C 1.53248 * 108.50726 * 51.30263 * 6 5 4 8 8 H 1.09009 * 109.40482 * 58.11778 * 7 6 5 9 9 C 1.52999 * 109.34239 * 177.91836 * 7 6 5 10 10 N 1.46466 * 109.40825 * 119.80577 * 2 1 3 11 11 C 1.46905 * 110.99722 * 282.35254 * 10 2 1 12 12 C 1.50696 * 109.47254 * 297.59448 * 11 10 2 13 13 H 1.07998 * 119.99872 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00218 * 180.27658 * 12 11 10 15 15 N 1.31515 * 119.99972 * 359.72812 * 14 12 11 16 16 Si 1.86801 * 120.00121 * 179.72758 * 14 12 11 17 17 H 1.48500 * 109.47142 * 60.00127 * 16 14 12 18 18 H 1.48507 * 109.47003 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47123 * 299.99996 * 16 14 12 20 20 H 1.09005 * 109.47028 * 293.58488 * 1 2 3 21 21 H 1.08993 * 109.47236 * 53.58488 * 1 2 3 22 22 H 1.08998 * 109.47212 * 173.59128 * 1 2 3 23 23 H 1.08999 * 109.62935 * 182.17926 * 4 2 1 24 24 H 1.09006 * 109.63099 * 61.58549 * 4 2 1 25 25 H 1.09007 * 109.63099 * 291.60116 * 6 5 4 26 26 H 1.08999 * 109.79740 * 171.11035 * 6 5 4 27 27 H 1.09003 * 109.46940 * 187.62024 * 9 7 6 28 28 H 1.08994 * 109.47214 * 307.61753 * 9 7 6 29 29 H 1.08994 * 109.47305 * 67.62367 * 9 7 6 30 30 H 1.09001 * 109.46574 * 177.59907 * 11 10 2 31 31 H 1.09001 * 109.47221 * 57.60210 * 11 10 2 32 32 H 0.97007 * 120.00186 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8910 1.0285 0.0000 4 6 2.0392 -0.7183 -1.2543 5 16 1.3716 -2.4104 -1.2617 6 6 1.8198 -2.9981 0.4004 7 6 1.3409 -1.9659 1.4269 8 1 0.2640 -1.8293 1.3278 9 6 1.6623 -2.4663 2.8366 10 7 2.0167 -0.6867 1.1987 11 6 1.9149 0.1806 2.3800 12 6 2.7884 1.3937 2.1894 13 1 3.3616 1.5091 1.2814 14 6 2.8600 2.3536 3.1764 15 7 2.1618 2.2133 4.2821 16 14 3.9487 3.8536 2.9434 17 1 3.5044 4.6060 1.7427 18 1 3.8495 4.7279 4.1397 19 1 5.3572 3.4195 2.7623 20 1 -0.3633 0.4112 0.9419 21 1 -0.3633 0.6100 -0.8269 22 1 -0.3633 -1.0212 -0.1147 23 1 3.1285 -0.7544 -1.2388 24 1 1.7001 -0.1870 -2.1437 25 1 2.9019 -3.1091 0.4701 26 1 1.3401 -3.9575 0.5945 27 1 1.2049 -1.8030 3.5707 28 1 1.2683 -3.4747 2.9628 29 1 2.7426 -2.4777 2.9806 30 1 2.2428 -0.3682 3.2629 31 1 0.8796 0.4953 2.5116 32 1 2.2124 2.8886 4.9767 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687803432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:01 Heat of formation + Delta-G solvation = 2.098131 kcal Electronic energy + Delta-G solvation = -13361.892789 eV Core-core repulsion = 11255.560481 eV Total energy + Delta-G solvation = -2106.332308 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.48636 -33.08315 -32.89752 -30.11050 -27.00219 -26.75287 -26.05556 -22.17284 -21.46862 -18.45626 -16.37913 -16.25942 -15.34936 -14.78394 -14.07468 -13.91070 -13.76923 -13.39511 -12.50076 -12.15792 -11.96611 -11.81165 -11.58201 -11.35080 -11.12418 -10.88835 -10.76144 -10.63847 -10.38758 -10.27279 -9.89190 -9.19257 -9.12414 -8.46703 -7.43067 -7.12040 -6.06925 -4.08090 2.19184 2.88622 3.30097 3.34689 3.37207 4.37092 4.68571 5.21741 5.28772 5.34581 5.51954 5.59739 5.68298 5.75846 5.89344 5.98439 6.04773 6.14251 6.19654 6.45250 6.50883 6.61212 6.70437 6.82291 7.29876 7.36253 7.74351 8.05548 8.15117 8.51183 8.98405 9.55841 11.03627 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.040795 B = 0.009631 C = 0.008624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.195177 B = 2906.440677 C = 3245.861877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.085 3.915 3 H 0.106 0.894 4 C -0.062 4.062 5 S -0.300 6.300 6 C -0.061 4.061 7 C 0.075 3.925 8 H 0.051 0.949 9 C -0.143 4.143 10 N -0.539 5.539 11 C 0.192 3.808 12 C -0.511 4.511 13 H 0.061 0.939 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.896 3.104 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.042 0.958 31 H -0.007 1.007 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 -7.034 -6.680 9.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.026 4.026 3 H 0.124 0.876 4 C -0.210 4.210 5 S -0.072 6.072 6 C -0.210 4.210 7 C -0.036 4.036 8 H 0.069 0.931 9 C -0.202 4.202 10 N -0.264 5.264 11 C 0.067 3.933 12 C -0.549 4.549 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.979 -7.604 -7.425 10.810 hybrid contribution 0.401 1.681 1.007 2.000 sum -1.578 -5.923 -6.419 8.875 Atomic orbital electron populations 1.22520 0.97754 1.02426 1.01771 1.21651 0.92794 0.99323 0.88797 0.87580 1.23648 1.03359 0.92640 1.01387 1.86420 1.78984 1.18694 1.23121 1.23552 1.04493 1.00471 0.92458 1.21700 0.97007 0.90742 0.94109 0.93111 1.21939 1.02700 0.99791 0.95742 1.61568 1.55613 1.03743 1.05476 1.19822 0.95624 0.90877 0.86947 1.21128 1.26437 1.04213 1.03159 0.92067 1.24958 0.95918 0.98382 0.95160 1.69940 1.41186 1.35373 1.07123 0.86591 0.81088 0.82495 0.77429 1.20296 1.21344 1.20192 0.92260 0.93144 0.91277 0.89491 0.88601 0.89537 0.88662 0.91431 0.93279 0.91734 0.93989 0.98910 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 8.05 37.16 0.30 -2.98 16 2 C 0.08 1.61 2.67 -67.82 -0.18 1.43 16 3 H 0.11 2.23 6.27 -51.93 -0.33 1.91 16 4 C -0.06 -1.00 6.22 37.29 0.23 -0.77 16 5 S -0.30 -4.75 20.77 -107.50 -2.23 -6.98 16 6 C -0.06 -0.94 5.96 37.29 0.22 -0.72 16 7 C 0.07 1.32 2.25 -67.82 -0.15 1.17 16 8 H 0.05 0.92 5.72 -51.92 -0.30 0.63 16 9 C -0.14 -2.39 7.99 37.16 0.30 -2.09 16 10 N -0.54 -11.12 4.27 -220.51 -0.94 -12.06 16 11 C 0.19 4.76 4.01 -4.98 -0.02 4.74 16 12 C -0.51 -13.84 8.23 -34.45 -0.28 -14.13 16 13 H 0.06 1.64 7.02 -52.49 -0.37 1.27 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.00 13.29 55.43 0.74 -25.27 16 16 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H 0.06 1.16 6.80 -51.93 -0.35 0.81 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.07 1.18 5.12 -51.93 -0.27 0.91 16 23 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 24 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 25 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 26 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.07 1.25 6.68 -51.93 -0.35 0.90 16 28 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.04 1.10 5.77 -51.93 -0.30 0.80 16 31 H -0.01 -0.18 6.81 -51.93 -0.35 -0.54 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 255.44 15.07 3.85 3.85 Total: -1.00 -27.99 255.44 -7.99 -35.98 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.70 Total: 0.12 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 0.32 Total: -11.88 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.20 Total: -37.33 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -2.23 Total: -6.98 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.99 -7.99 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687803432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.082 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds