Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00052 * 2 1 4 4 H 1.08998 * 110.64064 * 31.69203 * 3 2 1 5 5 C 1.54321 * 110.72353 * 268.54947 * 3 2 1 6 6 N 1.47026 * 107.26791 * 263.65175 * 5 3 2 7 7 C 1.36940 * 125.64258 * 181.03445 * 6 5 3 8 8 H 1.08003 * 119.99660 * 180.02562 * 7 6 5 9 9 C 1.38811 * 120.00559 * 0.02875 * 7 6 5 10 10 N 1.31617 * 119.99776 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00230 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46531 * 60.00328 * 11 9 7 13 13 H 1.48502 * 109.47014 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47009 * 300.00047 * 11 9 7 15 15 C 1.47419 * 108.70576 * 1.06162 * 6 5 3 16 16 C 1.54905 * 104.92834 * 335.81449 * 15 6 5 17 17 H 1.09004 * 111.00578 * 278.99532 * 16 15 6 18 18 C 1.50700 * 111.00925 * 155.13969 * 16 15 6 19 19 O 1.20821 * 120.00132 * 241.45756 * 18 16 15 20 20 O 1.34229 * 119.99563 * 61.45342 * 18 16 15 21 21 H 1.08996 * 109.47043 * 299.99527 * 1 2 3 22 22 H 1.08998 * 109.47163 * 59.99818 * 1 2 3 23 23 H 1.08998 * 109.47320 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.88101 * 144.23694 * 5 3 2 25 25 H 1.08997 * 110.01327 * 23.14060 * 5 3 2 26 26 H 0.97004 * 120.00521 * 179.97438 * 10 9 7 27 27 H 1.09002 * 110.36926 * 94.70918 * 15 6 5 28 28 H 1.08995 * 110.36556 * 216.92202 * 15 6 5 29 29 H 0.96708 * 116.99846 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3737 2.0094 0.5359 5 6 2.2657 1.7894 -1.4429 6 7 3.6701 1.4921 -1.7607 7 6 4.3003 1.7842 -2.9409 8 1 5.3394 1.5232 -3.0772 9 6 3.6037 2.4157 -3.9621 10 7 2.3372 2.7334 -3.7962 11 14 4.4636 2.8147 -5.5717 12 1 4.9542 1.5594 -6.1951 13 1 3.5077 3.4827 -6.4911 14 1 5.6120 3.7185 -5.3085 15 6 4.2872 0.8270 -0.5988 16 6 3.4372 1.2759 0.6159 17 1 3.7362 2.2670 0.9571 18 6 3.5241 0.2721 1.7366 19 8 2.5276 -0.2935 2.1197 20 8 4.7088 0.0065 2.3092 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 2.0896 2.8630 -1.5104 25 1 1.6094 1.2620 -2.1350 26 1 1.8504 3.1750 -4.5095 27 1 4.2426 -0.2560 -0.7137 28 1 5.3205 1.1528 -0.4799 29 1 4.7147 -0.6449 3.0240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690087974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = -102.970426 kcal Electronic energy + Delta-G solvation = -15123.577909 eV Core-core repulsion = 12434.103521 eV Total energy + Delta-G solvation = -2689.474388 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.03624 -37.97568 -35.68693 -35.48984 -32.43127 -29.48891 -27.91566 -25.97288 -24.79775 -22.57678 -20.40094 -19.71440 -17.66348 -16.98155 -16.67276 -15.44931 -15.17211 -14.86227 -14.25968 -14.05393 -13.47632 -13.29045 -12.47412 -12.19122 -11.80590 -11.51314 -11.17825 -11.04522 -10.82598 -10.68618 -10.60420 -10.21030 -10.17767 -9.90923 -9.71864 -8.81233 -8.64962 -6.89509 -5.74422 -3.08690 2.63681 3.38975 3.41084 3.45020 3.46485 4.27796 4.49137 5.08671 5.27958 5.46634 5.63483 5.66751 5.80826 5.82363 5.94344 6.09571 6.11663 6.28804 6.53214 6.71269 6.81467 7.28672 7.49229 7.75178 7.93211 8.19546 8.30012 9.16922 9.77043 10.41731 11.37533 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.041529 B = 0.009506 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.072405 B = 2944.816712 C = 3476.654306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.364 6.364 3 C 0.078 3.922 4 H 0.066 0.934 5 C 0.160 3.840 6 N -0.601 5.601 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.925 5.925 11 Si 0.916 3.084 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.284 1.284 15 C 0.155 3.845 16 C -0.099 4.099 17 H 0.120 0.880 18 C 0.491 3.509 19 O -0.499 6.499 20 O -0.521 6.521 21 H 0.032 0.968 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.254 0.746 27 H 0.027 0.973 28 H 0.052 0.948 29 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 -2.563 9.592 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.282 6.282 3 C 0.019 3.981 4 H 0.084 0.916 5 C 0.035 3.965 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.098 0.902 9 C -0.204 4.204 10 N -0.572 5.572 11 Si 0.746 3.254 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.029 3.971 16 C -0.120 4.120 17 H 0.138 0.862 18 C 0.333 3.667 19 O -0.385 6.385 20 O -0.332 6.332 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.081 -2.491 9.147 9.480 hybrid contribution 0.141 0.020 -0.360 0.387 sum 0.061 -2.471 8.787 9.128 Atomic orbital electron populations 1.22590 0.81916 1.01723 0.99284 1.87926 1.18841 1.26617 1.94824 1.23494 0.91103 0.85146 0.98374 0.91640 1.21759 0.86728 0.99318 0.88701 1.44360 1.07491 1.68987 1.11959 1.19039 0.94715 1.32550 0.89396 0.90152 1.24810 0.96147 1.00846 0.98561 1.69919 1.08078 1.46331 1.32868 0.86137 0.78201 0.78070 0.82978 1.21112 1.21598 1.21076 1.21369 0.94943 0.96044 0.84764 1.22565 0.99358 0.97596 0.92439 0.86216 1.23255 0.80095 0.81598 0.81795 1.90686 1.37194 1.49200 1.61425 1.84602 1.36375 1.60872 1.51379 0.94911 0.94122 0.90597 0.92502 0.92546 0.93602 0.95487 0.92937 0.74161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.88 101.05 1.10 1.80 15 2 O -0.36 -7.53 8.17 -58.36 -0.48 -8.01 15 3 C 0.08 1.56 2.96 -24.74 -0.07 1.49 15 4 H 0.07 1.18 7.88 -51.93 -0.41 0.77 15 5 C 0.16 3.90 5.14 -3.06 -0.02 3.88 15 6 N -0.60 -15.47 3.39 -170.08 -0.58 -16.05 15 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 15 8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 15 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 15 10 N -0.92 -26.89 10.31 55.49 0.57 -26.31 15 11 Si 0.92 21.94 29.55 -169.99 -5.02 16.91 15 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 15 C 0.16 3.31 6.67 -2.53 -0.02 3.29 15 16 C -0.10 -1.83 3.49 -89.47 -0.31 -2.14 15 17 H 0.12 1.96 8.14 -51.93 -0.42 1.54 15 18 C 0.49 8.38 7.46 36.01 0.27 8.64 15 19 O -0.50 -9.61 15.38 -26.41 -0.41 -10.01 15 20 O -0.52 -7.04 13.41 -39.26 -0.53 -7.56 15 21 H 0.03 0.49 8.11 -51.93 -0.42 0.07 15 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.06 1.48 7.38 -51.93 -0.38 1.10 15 25 H 0.06 1.54 7.43 -51.93 -0.39 1.16 15 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 15 27 H 0.03 0.61 8.03 -51.93 -0.42 0.19 15 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 29 H 0.40 3.45 9.10 45.56 0.41 3.87 15 LS Contribution 250.54 15.07 3.78 3.78 Total: -1.00 -32.70 250.54 -4.80 -37.50 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -2.84 Total: -0.38 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 0.70 Total: 10.14 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.01 Total: -42.36 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -1.41 Total: -25.58 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.70 -4.80 -37.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690087974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.467 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds