Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00594 * 2 1 4 4 H 1.09004 * 110.91708 * 32.44670 * 3 2 1 5 5 C 1.54917 * 111.00388 * 268.55100 * 3 2 1 6 6 N 1.47421 * 104.83049 * 204.91331 * 5 3 2 7 7 C 1.36939 * 125.64596 * 204.09087 * 6 5 3 8 8 H 1.08000 * 119.99903 * 163.17786 * 7 6 5 9 9 C 1.38813 * 119.99790 * 343.17577 * 7 6 5 10 10 N 1.31620 * 120.00492 * 331.90309 * 9 7 6 11 11 Si 1.86805 * 119.99884 * 151.90711 * 9 7 6 12 12 H 1.48496 * 109.47349 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.46948 * 300.00224 * 11 9 7 14 14 H 1.48505 * 109.47175 * 59.99533 * 11 9 7 15 15 C 1.47023 * 108.70467 * 24.35070 * 6 5 3 16 16 C 1.54328 * 107.26445 * 358.59038 * 15 6 5 17 17 H 1.08998 * 110.52030 * 96.45561 * 16 15 6 18 18 C 1.50700 * 110.99796 * 219.59875 * 16 15 6 19 19 O 1.20827 * 120.00343 * 113.78264 * 18 16 15 20 20 O 1.34236 * 120.00134 * 293.77936 * 18 16 15 21 21 H 1.08997 * 109.47218 * 59.99728 * 1 2 3 22 22 H 1.08994 * 109.47199 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46521 * 299.99862 * 1 2 3 24 24 H 1.08998 * 110.36765 * 86.06926 * 5 3 2 25 25 H 1.09003 * 110.45652 * 323.79449 * 5 3 2 26 26 H 0.97000 * 119.99473 * 353.96690 * 10 9 7 27 27 H 1.09003 * 109.87723 * 118.13568 * 15 6 5 28 28 H 1.08998 * 109.88584 * 239.29324 * 15 6 5 29 29 H 0.96702 * 116.99692 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3837 2.0104 0.5463 5 6 2.2696 1.7977 -1.4458 6 7 3.3612 2.7805 -1.3196 7 6 3.6237 3.7986 -2.1970 8 1 4.2564 4.6207 -1.8965 9 6 3.0766 3.7740 -3.4725 10 7 2.7963 2.6232 -4.0464 11 14 2.7382 5.3744 -4.3746 12 1 2.1572 5.0774 -5.7086 13 1 1.7798 6.1925 -3.5888 14 1 4.0080 6.1257 -4.5433 15 6 4.1251 2.4827 -0.0992 16 6 3.4486 1.2738 0.5809 17 1 3.9551 0.3484 0.3067 18 6 3.4226 1.4414 2.0783 19 8 2.3683 1.5754 2.6531 20 8 4.5708 1.4418 2.7738 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.3761 2.2729 -1.8507 25 1 2.5781 0.9676 -2.0813 26 1 3.0517 1.7920 -3.6164 27 1 5.1551 2.2369 -0.3575 28 1 4.1038 3.3424 0.5705 29 1 4.5035 1.5521 3.7321 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690087977.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -136.054018 kcal Electronic energy + Delta-G solvation = -15010.494927 eV Core-core repulsion = 12319.585927 eV Total energy + Delta-G solvation = -2690.909000 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68603 -39.75748 -37.72202 -37.15423 -34.68074 -31.34315 -29.92220 -27.63930 -26.39188 -24.34139 -22.37146 -21.47122 -19.69657 -19.17672 -18.40542 -17.40536 -16.67990 -16.43589 -16.09365 -15.68782 -15.53534 -15.11174 -14.66543 -14.09676 -13.86844 -13.16503 -12.98371 -12.70341 -12.58860 -12.53753 -12.42899 -11.89858 -11.86528 -11.70536 -11.67240 -10.71383 -10.56451 -9.13129 -8.37621 -5.41867 1.04453 1.59159 1.66795 1.86032 1.90597 2.44863 2.69205 3.14661 3.26679 3.57589 3.70101 3.86530 4.15350 4.23636 4.35999 4.48579 4.48982 4.69262 4.75705 4.81304 4.92078 4.96243 5.48237 5.59543 6.04907 6.25549 6.78657 6.91812 7.61243 8.15930 8.94076 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.009741 C = 0.008208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.597527 B = 2873.618677 C = 3410.562483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.390 6.390 3 C 0.102 3.898 4 H 0.078 0.922 5 C 0.136 3.864 6 N -0.621 5.621 7 C -0.354 4.354 8 H 0.069 0.931 9 C -0.073 4.073 10 N -0.940 5.940 11 Si 1.118 2.882 12 H -0.291 1.291 13 H -0.281 1.281 14 H -0.271 1.271 15 C 0.152 3.848 16 C -0.089 4.089 17 H 0.133 0.867 18 C 0.510 3.490 19 O -0.539 6.539 20 O -0.500 6.500 21 H 0.038 0.962 22 H 0.113 0.887 23 H 0.049 0.951 24 H 0.029 0.971 25 H 0.020 0.980 26 H 0.256 0.744 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 -3.070 11.259 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.308 6.308 3 C 0.043 3.957 4 H 0.095 0.905 5 C 0.010 3.990 6 N -0.350 5.350 7 C -0.482 4.482 8 H 0.087 0.913 9 C -0.270 4.270 10 N -0.582 5.582 11 Si 0.941 3.059 12 H -0.217 1.217 13 H -0.207 1.207 14 H -0.196 1.196 15 C 0.027 3.973 16 C -0.108 4.108 17 H 0.151 0.849 18 C 0.353 3.647 19 O -0.429 6.429 20 O -0.314 6.314 21 H 0.057 0.943 22 H 0.131 0.869 23 H 0.068 0.932 24 H 0.047 0.953 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -1.013 -2.525 9.595 9.974 hybrid contribution 0.476 -0.559 1.784 1.929 sum -0.538 -3.084 11.379 11.802 Atomic orbital electron populations 1.22983 0.79126 1.04340 1.00391 1.87773 1.21928 1.26257 1.94886 1.22987 0.92589 0.85253 0.94891 0.90451 1.21812 0.91142 0.91810 0.94255 1.44624 1.30542 1.34400 1.25428 1.20041 1.34479 0.98831 0.94831 0.91311 1.27252 0.99397 1.05889 0.94449 1.70903 1.50176 0.98445 1.38709 0.82835 0.77292 0.71173 0.74584 1.21691 1.20700 1.19602 1.21242 0.94929 0.93137 0.88001 1.22006 0.97998 1.02948 0.87860 0.84899 1.22696 0.81204 0.70666 0.90123 1.90678 1.33409 1.46955 1.71883 1.84509 1.34507 1.83981 1.28413 0.94290 0.86915 0.93192 0.95268 0.96244 0.93347 0.93268 0.94314 0.70656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.89 113.37 1.23 2.03 15 2 O -0.39 -14.22 10.51 -148.98 -1.57 -15.79 15 3 C 0.10 4.03 2.58 31.99 0.08 4.11 15 4 H 0.08 3.12 7.17 -2.38 -0.02 3.11 15 5 C 0.14 6.60 5.04 86.86 0.44 7.04 15 6 N -0.62 -31.94 3.29 -691.96 -2.28 -34.22 15 7 C -0.35 -20.02 10.02 84.03 0.84 -19.18 15 8 H 0.07 3.80 7.97 -2.91 -0.02 3.78 15 9 C -0.07 -4.20 5.08 84.86 0.43 -3.76 15 10 N -0.94 -57.76 12.93 21.65 0.28 -57.48 15 11 Si 1.12 50.59 30.00 68.60 2.06 52.64 15 12 H -0.29 -13.38 7.11 99.48 0.71 -12.68 15 13 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 14 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 15 C 0.15 6.23 6.84 86.73 0.59 6.82 15 16 C -0.09 -3.13 3.17 -10.35 -0.03 -3.16 15 17 H 0.13 4.34 8.14 -2.39 -0.02 4.32 15 18 C 0.51 15.71 7.51 71.24 0.54 16.25 15 19 O -0.54 -19.00 16.46 21.96 0.36 -18.64 15 20 O -0.50 -11.25 13.42 -51.47 -0.69 -11.94 15 21 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.11 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.05 1.36 8.11 -2.39 -0.02 1.34 15 24 H 0.03 1.55 7.95 -2.39 -0.02 1.53 15 25 H 0.02 1.03 6.80 -2.39 -0.02 1.02 15 26 H 0.26 16.01 6.06 -92.71 -0.56 15.45 15 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 28 H 0.04 1.55 7.82 -2.39 -0.02 1.53 15 29 H 0.43 5.11 9.10 -74.06 -0.67 4.43 15 Total: -1.00 -70.68 252.65 2.98 -67.69 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.69 Total: 7.58 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 4.12 Total: 10.15 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -2.00 Total: -91.70 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -1.90 Total: -46.37 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.06 Total: 52.64 kcal Total: -70.68 2.98 -67.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690087977.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.361 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds