Wall clock time and date at job start Mon Mar 30 2020 03:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46957 * 2 1 4 4 C 1.52995 * 109.47311 * 120.00351 * 2 1 3 5 5 C 1.50696 * 109.47033 * 184.99926 * 4 2 1 6 6 H 1.08002 * 120.00358 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00030 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00121 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00150 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47281 * 89.99933 * 9 7 5 11 11 H 1.48501 * 109.47235 * 210.00003 * 9 7 5 12 12 H 1.48500 * 109.46927 * 329.99932 * 9 7 5 13 13 N 1.46899 * 109.46798 * 240.00228 * 2 1 3 14 14 C 1.46904 * 110.99926 * 84.99859 * 13 2 1 15 15 H 1.09002 * 108.82951 * 34.29853 * 14 13 2 16 16 C 1.52333 * 108.87016 * 152.82842 * 14 13 2 17 17 C 1.54257 * 112.58780 * 120.67126 * 16 14 13 18 18 S 1.83956 * 102.58248 * 24.53339 * 17 16 14 19 19 C 1.54261 * 108.75565 * 275.83212 * 14 13 2 20 20 H 1.09005 * 109.47093 * 299.99620 * 1 2 3 21 21 H 1.08994 * 109.47408 * 59.99727 * 1 2 3 22 22 H 1.09006 * 109.47326 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47018 * 304.99954 * 4 2 1 24 24 H 1.09002 * 109.47404 * 64.99927 * 4 2 1 25 25 H 0.97002 * 120.00247 * 180.02562 * 8 7 5 26 26 H 1.00896 * 111.00098 * 321.04605 * 13 2 1 27 27 H 1.08997 * 108.86913 * 241.49683 * 16 14 13 28 28 H 1.09008 * 108.86740 * 359.85714 * 16 14 13 29 29 H 1.09004 * 110.78657 * 142.80396 * 17 16 14 30 30 H 1.09000 * 110.78913 * 266.25394 * 17 16 14 31 31 H 1.09007 * 110.78454 * 333.00647 * 19 14 13 32 32 H 1.08996 * 110.78584 * 96.45350 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5419 -0.6149 1.3125 6 1 4.0790 -0.0862 0.5390 7 6 4.2304 -1.1927 2.3581 8 7 5.5411 -1.0995 2.4137 9 14 3.3017 -2.1079 3.6957 10 1 3.1711 -3.5381 3.3177 11 1 4.0450 -2.0003 4.9767 12 1 1.9506 -1.5129 3.8559 13 7 2.0196 -0.6925 -1.1995 14 6 2.0823 0.2227 -2.3469 15 1 2.3531 1.2164 -1.9900 16 6 3.1584 -0.2656 -3.3083 17 6 2.6013 -0.5770 -4.7126 18 16 1.0942 0.4752 -4.7882 19 6 0.6881 0.2912 -3.0035 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.6054 -0.2618 2.1369 24 1 1.7517 -1.7716 1.2055 25 1 6.0256 -1.5063 3.1491 26 1 1.4495 -1.4978 -1.4101 27 1 3.9272 0.5021 -3.3962 28 1 3.6117 -1.1692 -2.9006 29 1 3.3143 -0.2875 -5.4846 30 1 2.3414 -1.6319 -4.8005 31 1 0.1315 -0.6291 -2.8263 32 1 0.1324 1.1563 -2.6420 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695815304.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:03 Heat of formation + Delta-G solvation = -27.299998 kcal Electronic energy + Delta-G solvation = -12823.045127 eV Core-core repulsion = 10715.438021 eV Total energy + Delta-G solvation = -2107.607106 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.33648 -35.97059 -34.31157 -31.53518 -29.43515 -29.19469 -25.45183 -24.56495 -21.67525 -20.95295 -18.76914 -17.71038 -16.96013 -16.49947 -15.93132 -15.33603 -14.92442 -14.59141 -14.24157 -14.10155 -13.74616 -13.49937 -13.33515 -12.92119 -12.65307 -12.56943 -12.38198 -11.91376 -11.71862 -11.67710 -11.31370 -11.20081 -10.90561 -10.66178 -9.11767 -8.72621 -8.16131 -6.14844 0.91202 1.33079 1.38975 1.40400 1.51133 2.43601 3.15737 3.32151 3.55084 3.96597 4.02292 4.13821 4.24039 4.26331 4.39317 4.54000 4.59117 4.70481 4.86828 4.95245 5.08090 5.15357 5.19273 5.28245 5.32877 5.54471 5.77903 6.31401 6.49832 6.69317 6.93541 7.45987 9.01298 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.047833 B = 0.007370 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.223974 B = 3798.177296 C = 4213.950580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.101 3.899 3 H 0.055 0.945 4 C -0.003 4.003 5 C -0.489 4.489 6 H 0.034 0.966 7 C -0.006 4.006 8 N -0.960 5.960 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.247 1.247 13 N -0.673 5.673 14 C 0.092 3.908 15 H 0.072 0.928 16 C -0.118 4.118 17 C -0.047 4.047 18 S -0.343 6.343 19 C -0.075 4.075 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.019 0.981 24 H 0.016 0.984 25 H 0.260 0.740 26 H 0.342 0.658 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 0.637 -10.845 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.008 4.008 3 H 0.073 0.927 4 C -0.041 4.041 5 C -0.528 4.528 6 H 0.052 0.948 7 C -0.200 4.200 8 N -0.603 5.603 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.218 1.218 12 H -0.171 1.171 13 N -0.305 5.305 14 C -0.020 4.020 15 H 0.090 0.910 16 C -0.157 4.157 17 C -0.195 4.195 18 S -0.118 6.118 19 C -0.225 4.225 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.037 0.963 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.162 0.838 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.071 1.278 -11.490 16.007 hybrid contribution -0.086 -0.829 1.481 1.699 sum -11.158 0.449 -10.009 14.996 Atomic orbital electron populations 1.22612 0.95848 1.02507 1.02622 1.21418 0.92524 0.96667 0.90211 0.92663 1.19582 0.94374 0.95968 0.94195 1.21329 0.92210 1.32325 1.06903 0.94759 1.25971 0.95504 0.97724 1.00846 1.70088 1.08493 1.48119 1.33594 0.85724 0.79662 0.79321 0.78214 1.19771 1.21763 1.17062 1.60598 1.58286 1.08992 1.02586 1.22165 0.91718 0.96851 0.91290 0.90974 1.21964 0.98329 1.03111 0.92337 1.24186 0.94657 1.00986 0.99634 1.87957 1.37789 1.69080 1.17008 1.25193 1.00545 1.06085 0.90642 0.92032 0.91282 0.91935 0.96269 0.96553 0.93134 0.83768 0.91049 0.90167 0.86509 0.88239 0.88245 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.65 8.90 71.98 0.64 -4.01 16 2 C 0.10 3.60 2.53 44.91 0.11 3.71 16 3 H 0.06 2.12 7.40 -2.39 -0.02 2.10 16 4 C 0.00 -0.15 3.72 29.85 0.11 -0.04 16 5 C -0.49 -27.81 9.39 25.60 0.24 -27.57 16 6 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 7 C -0.01 -0.35 5.47 84.65 0.46 0.12 16 8 N -0.96 -61.20 13.96 21.45 0.30 -60.90 16 9 Si 0.95 44.69 27.47 68.60 1.88 46.58 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 12 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 13 N -0.67 -22.26 5.52 -468.41 -2.58 -24.85 16 14 C 0.09 2.57 2.95 45.12 0.13 2.70 16 15 H 0.07 2.24 7.37 -2.39 -0.02 2.22 16 16 C -0.12 -3.12 6.12 30.80 0.19 -2.93 16 17 C -0.05 -0.99 7.46 72.41 0.54 -0.45 16 18 S -0.34 -8.34 23.27 -56.49 -1.31 -9.66 16 19 C -0.07 -1.71 5.29 72.41 0.38 -1.33 16 20 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 21 H 0.07 1.51 5.52 -2.39 -0.01 1.50 16 22 H 0.06 1.53 8.13 -2.38 -0.02 1.51 16 23 H 0.02 0.85 7.20 -2.38 -0.02 0.84 16 24 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 25 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.34 9.99 7.86 -89.70 -0.70 9.29 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 2.39 7.79 -2.38 -0.02 2.37 16 29 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.10 2.07 7.57 -2.38 -0.02 2.05 16 32 H 0.11 2.33 7.15 -2.39 -0.02 2.31 16 Total: -1.00 -65.55 265.23 1.43 -64.12 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.33 Total: 14.50 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 2.81 Total: -29.80 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.29 Total: -85.75 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.31 Total: -9.66 kcal Total: -65.55 1.43 -64.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815304.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.823 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds