Wall clock time and date at job start Mon Mar 30 2020 03:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09002 * 109.47197 * 2 1 4 4 C 1.53002 * 109.47326 * 119.99771 * 2 1 3 5 5 C 1.50703 * 109.47362 * 184.99956 * 4 2 1 6 6 H 1.08002 * 119.99703 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00009 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99994 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47251 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47204 * 120.00260 * 9 7 5 12 12 H 1.48509 * 109.47012 * 240.00061 * 9 7 5 13 13 S 1.81399 * 109.47531 * 240.00168 * 2 1 3 14 14 C 1.81402 * 103.00095 * 64.99835 * 13 2 1 15 15 C 1.52998 * 109.47087 * 180.02562 * 14 13 2 16 16 C 1.53937 * 113.73041 * 175.00048 * 15 14 13 17 17 N 1.47955 * 86.18157 * 138.07673 * 16 15 14 18 18 C 1.47961 * 90.76430 * 335.31007 * 17 16 15 19 19 H 1.08997 * 109.47503 * 300.00174 * 1 2 3 20 20 H 1.09007 * 109.47441 * 59.99902 * 1 2 3 21 21 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47016 * 305.00507 * 4 2 1 23 23 H 1.09000 * 109.46653 * 65.00260 * 4 2 1 24 24 H 0.96992 * 119.99862 * 179.97438 * 8 7 5 25 25 H 1.08998 * 109.47058 * 60.00121 * 14 13 2 26 26 H 1.09002 * 109.47001 * 300.00500 * 14 13 2 27 27 H 1.08998 * 113.01378 * 43.36608 * 15 14 13 28 28 H 1.09005 * 113.75745 * 252.39395 * 16 15 14 29 29 H 1.08996 * 113.76539 * 23.76082 * 16 15 14 30 30 H 1.00907 * 111.00276 * 88.20211 * 17 16 15 31 31 H 1.09002 * 113.75838 * 270.37219 * 18 17 16 32 32 H 1.09002 * 113.86277 * 139.01376 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2303 -1.1925 2.3584 8 7 3.5763 -1.8368 3.3001 9 14 6.0919 -1.0601 2.4374 10 1 6.5836 -0.2909 1.2662 11 1 6.4859 -0.3638 3.6885 12 1 6.6861 -2.4210 2.4201 13 16 2.1347 -0.8551 -1.4811 14 6 1.5664 0.2154 -2.8309 15 6 2.0040 -0.3784 -4.1714 16 6 1.4679 0.3890 -5.3934 17 7 2.8161 0.2069 -5.9751 18 6 3.4034 0.0768 -4.6233 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6053 -0.2617 2.1369 23 1 1.7516 -1.7715 1.2056 24 1 4.0606 -2.2435 4.0355 25 1 2.0001 1.2085 -2.7141 26 1 0.4792 0.2882 -2.8037 27 1 1.8533 -1.4563 -4.2295 28 1 0.6817 -0.1390 -5.9332 29 1 1.2169 1.4287 -5.1837 30 1 2.8770 -0.6639 -6.4812 31 1 3.7185 1.0252 -4.1882 32 1 4.1641 -0.7001 -4.5459 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695818168.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:10 Heat of formation + Delta-G solvation = -6.733084 kcal Electronic energy + Delta-G solvation = -12305.830074 eV Core-core repulsion = 10199.114816 eV Total energy + Delta-G solvation = -2106.715258 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.42813 -36.38959 -34.05447 -31.77754 -29.35975 -26.91013 -25.30715 -25.10168 -22.31959 -20.95052 -18.50392 -17.62837 -17.11817 -16.55384 -15.99728 -15.45066 -15.19243 -14.72432 -14.27284 -14.06238 -13.66544 -13.47466 -13.31171 -13.05342 -12.74911 -12.56384 -12.35874 -12.18119 -11.85192 -11.61933 -11.26626 -11.19099 -10.63702 -10.43325 -9.48821 -8.41567 -8.19252 -6.26651 0.93347 1.38475 1.39753 1.52912 1.94766 2.41815 3.08940 3.15726 3.47574 3.73727 4.10010 4.24643 4.30848 4.32538 4.50755 4.54515 4.61895 4.73226 4.81731 4.89370 4.91614 5.02102 5.02283 5.19492 5.26632 5.38882 5.53979 5.79061 6.21754 6.38538 6.85909 7.40636 8.93095 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034711 B = 0.007472 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.469139 B = 3746.202276 C = 4410.316718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 H 0.071 0.929 4 C 0.045 3.955 5 C -0.521 4.521 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.281 1.281 13 S -0.292 6.292 14 C -0.072 4.072 15 C -0.135 4.135 16 C 0.037 3.963 17 N -0.669 5.669 18 C 0.022 3.978 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.009 0.991 23 H -0.005 1.005 24 H 0.262 0.738 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.345 0.655 31 H 0.092 0.908 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 4.436 -15.150 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 H 0.089 0.911 4 C 0.007 3.993 5 C -0.560 4.560 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.207 1.207 13 S -0.065 6.065 14 C -0.221 4.221 15 C -0.156 4.156 16 C -0.095 4.095 17 N -0.296 5.296 18 C -0.108 4.108 19 H 0.083 0.917 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.027 0.973 23 H 0.013 0.987 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.160 0.840 31 H 0.110 0.890 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.187 4.162 -15.386 16.480 hybrid contribution -0.016 -0.094 1.253 1.257 sum -4.204 4.068 -14.133 15.296 Atomic orbital electron populations 1.22018 0.92562 1.02413 1.02396 1.23112 0.98202 1.00202 0.94945 0.91052 1.18828 0.95539 0.94165 0.90788 1.21601 0.92959 1.33734 1.07668 0.92015 1.25877 1.03358 0.95068 0.95399 1.70090 1.37377 1.37270 1.12902 0.85485 0.79982 0.77916 0.78251 1.18736 1.20291 1.20706 1.87247 1.77287 1.39765 1.02159 1.23431 1.03829 1.00398 0.94457 1.24047 0.97473 1.00998 0.93067 1.23746 0.92630 1.01331 0.91752 1.65066 1.09280 1.39639 1.15617 1.23690 0.95800 1.01538 0.89742 0.91657 0.90986 0.92527 0.97263 0.98682 0.92910 0.90249 0.89119 0.88847 0.88869 0.87982 0.84028 0.88968 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 9.10 71.98 0.65 -3.73 16 2 C -0.04 -1.47 2.77 30.59 0.08 -1.39 16 3 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 4 C 0.04 2.35 4.45 29.85 0.13 2.49 16 5 C -0.52 -29.81 8.53 25.60 0.22 -29.59 16 6 H 0.06 3.48 7.60 -2.91 -0.02 3.46 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 9 Si 0.96 45.41 29.54 68.60 2.03 47.43 16 10 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 S -0.29 -11.16 20.45 -56.49 -1.16 -12.31 16 14 C -0.07 -1.88 5.49 71.98 0.40 -1.49 16 15 C -0.14 -2.97 3.82 -10.15 -0.04 -3.01 16 16 C 0.04 0.63 8.47 86.41 0.73 1.36 16 17 N -0.67 -13.16 8.55 -524.15 -4.48 -17.65 16 18 C 0.02 0.51 8.46 86.41 0.73 1.24 16 19 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 20 H 0.07 1.88 6.92 -2.38 -0.02 1.86 16 21 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 23 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 25 H 0.08 2.04 7.84 -2.39 -0.02 2.02 16 26 H 0.09 2.08 7.14 -2.39 -0.02 2.06 16 27 H 0.09 2.16 8.13 -2.39 -0.02 2.14 16 28 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.10 1.67 8.10 -2.39 -0.02 1.65 16 30 H 0.34 5.68 8.89 -89.69 -0.80 4.89 16 31 H 0.09 2.22 7.89 -2.39 -0.02 2.20 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -64.94 277.50 0.33 -64.61 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.29 Total: 8.76 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 3.37 Total: -33.65 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -4.20 Total: -74.84 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: -11.16 SS G_CDS: -1.16 Total: -12.31 kcal Total: -64.94 0.33 -64.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818168.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.878 kcal (2) G-P(sol) polarization free energy of solvation -64.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds