Wall clock time and date at job start Mon Mar 30 2020 03:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.46990 * 2 1 4 4 C 1.53006 * 109.46700 * 119.99741 * 2 1 3 5 5 C 1.50702 * 109.46949 * 182.10025 * 4 2 1 6 6 H 1.07999 * 119.99867 * 357.67050 * 5 4 2 7 7 C 1.37877 * 119.99996 * 177.67266 * 5 4 2 8 8 N 1.31513 * 119.99970 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99904 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47297 * 90.00093 * 9 7 5 11 11 H 1.48503 * 109.47128 * 210.00127 * 9 7 5 12 12 H 1.48500 * 109.47112 * 330.00054 * 9 7 5 13 13 N 1.46897 * 109.47236 * 239.99129 * 2 1 3 14 14 C 1.46345 * 111.01561 * 66.34267 * 13 2 1 15 15 C 1.52659 * 110.88931 * 162.87097 * 14 13 2 16 16 C 1.53272 * 109.66125 * 70.13588 * 15 14 13 17 17 S 1.81863 * 108.50530 * 299.08839 * 16 15 14 18 18 C 1.47036 * 111.00215 * 301.57771 * 13 2 1 19 19 H 1.09004 * 109.47190 * 65.87492 * 1 2 3 20 20 H 1.09001 * 109.47637 * 185.87382 * 1 2 3 21 21 H 1.09008 * 109.47335 * 305.87626 * 1 2 3 22 22 H 1.08999 * 109.46798 * 302.09818 * 4 2 1 23 23 H 1.08992 * 109.47330 * 62.09785 * 4 2 1 24 24 H 0.96996 * 119.99979 * 180.02562 * 8 7 5 25 25 H 1.08997 * 109.13144 * 42.53861 * 14 13 2 26 26 H 1.09000 * 109.22912 * 283.26588 * 14 13 2 27 27 H 1.09004 * 109.43498 * 310.08546 * 15 14 13 28 28 H 1.08998 * 109.42942 * 190.18204 * 15 14 13 29 29 H 1.08997 * 109.63040 * 58.79853 * 16 15 14 30 30 H 1.09005 * 109.63073 * 179.38717 * 16 15 14 31 31 H 1.09002 * 109.59973 * 69.09791 * 18 13 2 32 32 H 1.08999 * 109.73437 * 308.70112 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5460 -0.6763 1.2757 6 1 4.0869 -0.2158 0.4622 7 6 4.2335 -1.2232 2.3384 8 7 5.5479 -1.1835 2.3617 9 14 3.2980 -2.0191 3.7458 10 1 3.0980 -3.4614 3.4542 11 1 4.0749 -1.8713 5.0028 12 1 1.9776 -1.3573 3.8994 13 7 2.0197 -0.6927 -1.1993 14 6 1.6778 0.0520 -2.4118 15 6 2.5225 -0.4158 -3.5943 16 6 2.0924 -1.8273 -4.0088 17 16 2.3626 -2.9493 -2.6033 18 6 1.5177 -2.0736 -1.2522 19 1 -0.3634 0.4200 -0.9379 20 1 -0.3634 -1.0222 0.1052 21 1 -0.3634 0.6023 0.8327 22 1 1.6461 -0.2295 2.1388 23 1 1.7076 -1.7591 1.2308 24 1 6.0315 -1.5686 3.1091 25 1 1.8566 1.1137 -2.2413 26 1 0.6234 -0.1009 -2.6417 27 1 3.5740 -0.4267 -3.3071 28 1 2.3825 0.2668 -4.4324 29 1 1.0360 -1.8242 -4.2771 30 1 2.6884 -2.1566 -4.8600 31 1 0.4435 -2.0654 -1.4371 32 1 1.7220 -2.5760 -0.3066 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695903105.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:51 Heat of formation + Delta-G solvation = 0.509399 kcal Electronic energy + Delta-G solvation = -13177.669147 eV Core-core repulsion = 11071.267946 eV Total energy + Delta-G solvation = -2106.401201 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.44476 -34.25043 -32.33802 -30.22848 -28.08336 -27.14993 -24.58975 -22.74212 -20.79699 -19.06386 -16.88957 -16.54443 -15.22584 -14.66508 -14.32035 -14.23907 -13.66870 -13.39705 -13.19384 -12.59514 -12.43734 -12.13330 -11.72261 -11.57123 -11.27508 -10.98187 -10.75331 -10.50662 -10.20381 -9.75584 -9.59582 -9.47234 -9.05475 -8.42426 -7.71460 -7.27371 -5.90190 -3.85096 2.13211 2.84321 3.35406 3.43298 3.43938 4.29246 4.53848 4.90897 5.00225 5.38766 5.43409 5.44651 5.49448 5.53491 5.61141 5.75764 5.79825 5.83473 5.95246 6.06633 6.29381 6.40235 6.42636 6.64883 7.01218 7.23787 7.52983 7.65827 7.89992 8.71543 9.24117 9.72046 11.23708 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.010063 C = 0.009236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.373289 B = 2781.903153 C = 3030.727968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.081 0.919 4 C -0.009 4.009 5 C -0.493 4.493 6 H 0.082 0.918 7 C 0.064 3.936 8 N -0.904 5.904 9 Si 0.869 3.131 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.504 5.504 14 C 0.045 3.955 15 C -0.118 4.118 16 C -0.084 4.084 17 S -0.255 6.255 18 C 0.105 3.895 19 H 0.044 0.956 20 H 0.051 0.949 21 H 0.059 0.941 22 H 0.022 0.978 23 H 0.010 0.990 24 H 0.260 0.740 25 H 0.078 0.922 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.301 0.928 -9.904 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.013 4.013 3 H 0.099 0.901 4 C -0.046 4.046 5 C -0.531 4.531 6 H 0.100 0.900 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.697 3.303 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.193 1.193 13 N -0.228 5.228 14 C -0.084 4.084 15 C -0.157 4.157 16 C -0.233 4.233 17 S -0.028 6.028 18 C -0.134 4.134 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.040 0.960 23 H 0.028 0.972 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.045 0.955 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.087 -0.153 -9.762 13.338 hybrid contribution -1.902 0.649 0.766 2.151 sum -10.989 0.496 -8.996 14.210 Atomic orbital electron populations 1.22589 0.99441 1.01570 1.01072 1.21803 0.89980 0.98685 0.90840 0.90102 1.19738 0.98383 0.94709 0.91772 1.21032 0.88801 1.37021 1.06268 0.90016 1.25006 0.94657 0.96079 0.97889 1.69905 1.06211 1.46622 1.31682 0.86955 0.80397 0.80204 0.82721 1.20520 1.21539 1.19314 1.62096 1.59069 1.00013 1.01581 1.22045 0.96388 0.99051 0.90886 1.21783 1.02503 0.94249 0.97152 1.23425 1.03639 0.97719 0.98469 1.86863 1.78069 1.32154 1.05723 1.23974 0.96146 0.93112 1.00172 0.93663 0.92973 0.92214 0.96007 0.97225 0.93032 0.90353 0.95538 0.89294 0.91229 0.90833 0.88311 0.93675 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 8.47 37.16 0.31 -2.57 16 2 C 0.10 1.84 2.29 -67.71 -0.15 1.69 16 3 H 0.08 1.57 7.92 -51.93 -0.41 1.16 16 4 C -0.01 -0.20 3.32 -27.88 -0.09 -0.29 16 5 C -0.49 -13.87 9.33 -34.44 -0.32 -14.19 16 6 H 0.08 2.54 7.94 -52.49 -0.42 2.12 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 9 Si 0.87 21.81 27.52 -169.99 -4.68 17.13 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.40 6.48 56.52 0.37 -6.04 16 13 N -0.50 -9.36 4.12 -231.47 -0.95 -10.31 16 14 C 0.04 0.67 4.55 -4.30 -0.02 0.65 16 15 C -0.12 -1.59 5.95 -26.76 -0.16 -1.75 16 16 C -0.08 -1.11 6.52 37.30 0.24 -0.87 16 17 S -0.25 -4.40 22.50 -107.50 -2.42 -6.82 16 18 C 0.10 1.88 5.11 60.14 0.31 2.19 16 19 H 0.04 0.62 6.69 -51.93 -0.35 0.27 16 20 H 0.05 0.79 6.93 -51.93 -0.36 0.43 16 21 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 22 H 0.02 0.51 7.03 -51.93 -0.37 0.14 16 23 H 0.01 0.22 5.71 -51.93 -0.30 -0.07 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.08 1.12 7.81 -51.93 -0.41 0.72 16 26 H 0.03 0.37 7.00 -51.93 -0.36 0.00 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.72 6.85 -51.93 -0.36 0.37 16 32 H 0.12 2.49 5.92 -51.93 -0.31 2.18 16 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -30.59 258.62 -8.27 -38.87 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.91 Total: -1.85 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 0.02 Total: -13.38 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.18 Total: -37.84 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.68 Total: 17.13 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -2.42 Total: -6.82 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.59 -8.27 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903105.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.375 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds