Wall clock time and date at job start Mon Mar 30 2020 03:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.46990 * 2 1 4 4 C 1.53006 * 109.46700 * 119.99741 * 2 1 3 5 5 C 1.50702 * 109.46949 * 182.10025 * 4 2 1 6 6 H 1.07999 * 119.99867 * 357.67050 * 5 4 2 7 7 C 1.37877 * 119.99996 * 177.67266 * 5 4 2 8 8 N 1.31513 * 119.99970 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99904 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47297 * 90.00093 * 9 7 5 11 11 H 1.48503 * 109.47128 * 210.00127 * 9 7 5 12 12 H 1.48500 * 109.47112 * 330.00054 * 9 7 5 13 13 N 1.46897 * 109.47236 * 239.99129 * 2 1 3 14 14 C 1.46345 * 111.01561 * 66.34267 * 13 2 1 15 15 C 1.52659 * 110.88931 * 162.87097 * 14 13 2 16 16 C 1.53272 * 109.66125 * 70.13588 * 15 14 13 17 17 S 1.81863 * 108.50530 * 299.08839 * 16 15 14 18 18 C 1.47036 * 111.00215 * 301.57771 * 13 2 1 19 19 H 1.09004 * 109.47190 * 65.87492 * 1 2 3 20 20 H 1.09001 * 109.47637 * 185.87382 * 1 2 3 21 21 H 1.09008 * 109.47335 * 305.87626 * 1 2 3 22 22 H 1.08999 * 109.46798 * 302.09818 * 4 2 1 23 23 H 1.08992 * 109.47330 * 62.09785 * 4 2 1 24 24 H 0.96996 * 119.99979 * 180.02562 * 8 7 5 25 25 H 1.08997 * 109.13144 * 42.53861 * 14 13 2 26 26 H 1.09000 * 109.22912 * 283.26588 * 14 13 2 27 27 H 1.09004 * 109.43498 * 310.08546 * 15 14 13 28 28 H 1.08998 * 109.42942 * 190.18204 * 15 14 13 29 29 H 1.08997 * 109.63040 * 58.79853 * 16 15 14 30 30 H 1.09005 * 109.63073 * 179.38717 * 16 15 14 31 31 H 1.09002 * 109.59973 * 69.09791 * 18 13 2 32 32 H 1.08999 * 109.73437 * 308.70112 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5460 -0.6763 1.2757 6 1 4.0869 -0.2158 0.4622 7 6 4.2335 -1.2232 2.3384 8 7 5.5479 -1.1835 2.3617 9 14 3.2980 -2.0191 3.7458 10 1 3.0980 -3.4614 3.4542 11 1 4.0749 -1.8713 5.0028 12 1 1.9776 -1.3573 3.8994 13 7 2.0197 -0.6927 -1.1993 14 6 1.6778 0.0520 -2.4118 15 6 2.5225 -0.4158 -3.5943 16 6 2.0924 -1.8273 -4.0088 17 16 2.3626 -2.9493 -2.6033 18 6 1.5177 -2.0736 -1.2522 19 1 -0.3634 0.4200 -0.9379 20 1 -0.3634 -1.0222 0.1052 21 1 -0.3634 0.6023 0.8327 22 1 1.6461 -0.2295 2.1388 23 1 1.7076 -1.7591 1.2308 24 1 6.0315 -1.5686 3.1091 25 1 1.8566 1.1137 -2.2413 26 1 0.6234 -0.1009 -2.6417 27 1 3.5740 -0.4267 -3.3071 28 1 2.3825 0.2668 -4.4324 29 1 1.0360 -1.8242 -4.2771 30 1 2.6884 -2.1566 -4.8600 31 1 0.4435 -2.0654 -1.4371 32 1 1.7220 -2.5760 -0.3066 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695903105.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:51 Heat of formation + Delta-G solvation = -19.888953 kcal Electronic energy + Delta-G solvation = -13178.553686 eV Core-core repulsion = 11071.267946 eV Total energy + Delta-G solvation = -2107.285739 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.82282 -35.70403 -34.31294 -31.75779 -29.74278 -28.45118 -25.91878 -24.54354 -22.10853 -20.57778 -18.78682 -18.16312 -16.63392 -16.27984 -15.87773 -15.59127 -15.01332 -14.79484 -14.45171 -14.37154 -13.98217 -13.60460 -13.31831 -13.00114 -12.68303 -12.47803 -12.07703 -12.01020 -11.76180 -11.68980 -11.36407 -11.08775 -10.75075 -10.65567 -9.04663 -8.61978 -8.16421 -6.15557 0.87800 1.36598 1.37448 1.47842 1.60352 2.41485 2.96765 3.20715 3.81644 3.91959 4.06750 4.15445 4.30595 4.39179 4.43977 4.50763 4.54854 4.63588 4.82586 4.93696 4.96786 5.04463 5.13101 5.19665 5.29960 5.52203 5.74200 6.13361 6.28172 6.51034 6.93947 7.44987 9.01109 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.010063 C = 0.009236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.373289 B = 2781.903153 C = 3030.727968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 H 0.070 0.930 4 C -0.007 4.007 5 C -0.488 4.488 6 H 0.036 0.964 7 C -0.003 4.003 8 N -0.957 5.957 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.243 1.243 13 N -0.536 5.536 14 C 0.044 3.956 15 C -0.115 4.115 16 C -0.065 4.065 17 S -0.314 6.314 18 C 0.116 3.884 19 H 0.068 0.932 20 H 0.055 0.945 21 H 0.069 0.931 22 H 0.026 0.974 23 H 0.014 0.986 24 H 0.260 0.740 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 1.218 -10.748 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.010 4.010 3 H 0.088 0.912 4 C -0.045 4.045 5 C -0.527 4.527 6 H 0.055 0.945 7 C -0.198 4.198 8 N -0.600 5.600 9 Si 0.764 3.236 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.166 1.166 13 N -0.260 5.260 14 C -0.084 4.084 15 C -0.154 4.154 16 C -0.213 4.213 17 S -0.088 6.088 18 C -0.123 4.123 19 H 0.087 0.913 20 H 0.074 0.926 21 H 0.088 0.912 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.889 0.148 -10.623 15.944 hybrid contribution -0.966 0.618 0.901 1.458 sum -12.855 0.767 -9.722 16.135 Atomic orbital electron populations 1.22434 0.95932 1.02242 1.02818 1.21600 0.92669 0.97308 0.89438 0.91187 1.19688 0.94763 0.95619 0.94391 1.21271 0.91588 1.35345 1.04448 0.94546 1.25947 0.95491 0.97148 1.01236 1.70084 1.08314 1.48664 1.32942 0.85818 0.79860 0.79218 0.78666 1.20084 1.21507 1.16646 1.61973 1.60533 1.00690 1.02844 1.22138 0.97880 0.98726 0.89674 1.21764 1.00314 0.95372 0.97920 1.23528 1.05570 0.95904 0.96317 1.87034 1.78913 1.34424 1.08423 1.23790 0.97261 0.92430 0.98815 0.91331 0.92627 0.91235 0.95551 0.96794 0.93133 0.90070 0.93220 0.92467 0.87422 0.88256 0.86523 0.91254 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.80 8.47 71.98 0.61 -4.19 16 2 C 0.10 3.68 2.29 44.92 0.10 3.78 16 3 H 0.07 2.69 7.92 -2.39 -0.02 2.67 16 4 C -0.01 -0.33 3.32 29.85 0.10 -0.23 16 5 C -0.49 -28.23 9.33 25.60 0.24 -27.99 16 6 H 0.04 2.38 7.94 -2.91 -0.02 2.35 16 7 C 0.00 -0.20 5.47 84.65 0.46 0.26 16 8 N -0.96 -62.16 13.96 21.45 0.30 -61.86 16 9 Si 0.94 45.30 27.52 68.60 1.89 47.19 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.24 -10.63 6.48 99.48 0.64 -9.98 16 13 N -0.54 -19.42 4.12 -886.24 -3.65 -23.08 16 14 C 0.04 1.19 4.55 86.30 0.39 1.58 16 15 C -0.11 -2.82 5.95 30.57 0.18 -2.63 16 16 C -0.07 -1.53 6.52 72.07 0.47 -1.06 16 17 S -0.31 -10.65 22.50 -56.49 -1.27 -11.92 16 18 C 0.12 4.04 5.11 127.67 0.65 4.69 16 19 H 0.07 1.57 6.69 -2.39 -0.02 1.56 16 20 H 0.05 1.49 6.93 -2.39 -0.02 1.48 16 21 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 22 H 0.03 1.18 7.03 -2.39 -0.02 1.16 16 23 H 0.01 0.63 5.71 -2.39 -0.01 0.62 16 24 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.08 2.15 7.81 -2.39 -0.02 2.13 16 26 H 0.05 1.15 7.00 -2.39 -0.02 1.13 16 27 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.07 2.04 6.85 -2.39 -0.02 2.02 16 32 H 0.09 3.75 5.92 -2.39 -0.01 3.73 16 Total: -1.00 -68.81 258.62 1.49 -67.32 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.02 Total: 8.13 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 3.21 Total: -25.79 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -3.35 Total: -84.94 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.89 Total: 47.19 kcal Atomic # 16 Polarization: -10.65 SS G_CDS: -1.27 Total: -11.92 kcal Total: -68.81 1.49 -67.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695903105.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.433 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds