Wall clock time and date at job start Mon Mar 30 2020 03:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.50695 * 109.47112 * 184.99734 * 4 2 1 6 6 H 1.07998 * 120.00102 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00385 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99790 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00403 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47210 * 59.99646 * 9 7 5 11 11 H 1.48500 * 109.47090 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47176 * 299.99727 * 9 7 5 13 13 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 14 14 C 1.46892 * 111.00363 * 85.00189 * 13 2 1 15 15 C 1.52993 * 109.47679 * 179.97438 * 14 13 2 16 16 C 1.53051 * 113.15166 * 275.54756 * 15 14 13 17 17 S 1.81493 * 89.86326 * 211.86261 * 16 15 14 18 18 C 1.53046 * 113.15681 * 175.11652 * 15 14 13 19 19 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 20 20 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 21 21 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 23 23 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 24 24 H 0.96992 * 120.00329 * 180.02562 * 8 7 5 25 25 H 1.00903 * 111.00184 * 321.04231 * 13 2 1 26 26 H 1.08999 * 109.46953 * 300.00101 * 14 13 2 27 27 H 1.09001 * 109.47256 * 59.99520 * 14 13 2 28 28 H 1.09003 * 112.49423 * 45.32418 * 15 14 13 29 29 H 1.08996 * 113.14681 * 327.10961 * 16 15 14 30 30 H 1.09000 * 113.14643 * 96.59055 * 16 15 14 31 31 H 1.08999 * 113.14650 * 263.40672 * 18 15 14 32 32 H 1.09001 * 113.14490 * 32.84622 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0855 0.5395 7 6 4.2306 -1.1936 2.3577 8 7 3.5766 -1.8378 3.2994 9 14 6.0921 -1.0612 2.4367 10 1 6.4846 0.3698 2.4971 11 1 6.5871 -1.7613 3.6491 12 1 6.6846 -1.6863 1.2269 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2225 -2.3469 15 6 2.5961 -0.5328 -3.5742 16 6 4.1234 -0.6049 -3.6408 17 16 4.0411 -0.5824 -5.4537 18 6 2.5827 0.3122 -4.8501 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6055 -0.2618 2.1369 23 1 1.7517 -1.7715 1.2056 24 1 4.0609 -2.2446 4.0348 25 1 1.4495 -1.4979 -1.4101 26 1 1.0871 0.6163 -2.5525 27 1 2.7588 1.0461 -2.1183 28 1 2.1155 -1.5034 -3.6979 29 1 4.6125 0.2750 -3.2231 30 1 4.5262 -1.5356 -3.2412 31 1 1.6961 0.1492 -5.4628 32 1 2.7737 1.3694 -4.6658 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697978610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:56 Heat of formation + Delta-G solvation = 6.073589 kcal Electronic energy + Delta-G solvation = -12599.619124 eV Core-core repulsion = 10493.459205 eV Total energy + Delta-G solvation = -2106.159919 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.84314 -35.65924 -32.56453 -30.15522 -27.25923 -26.21338 -24.92056 -22.85497 -20.68209 -19.48104 -16.45784 -16.15913 -15.64934 -14.96262 -14.56457 -14.23516 -13.44326 -12.92044 -12.78641 -12.69587 -12.41140 -11.84472 -11.77035 -11.48562 -11.15588 -11.02044 -10.71161 -10.55457 -10.51188 -10.07300 -9.91687 -9.24805 -8.98707 -8.24594 -7.79422 -7.59875 -5.87137 -3.84817 1.82029 2.00394 3.40849 3.45086 3.47956 4.26053 4.56977 4.67517 4.95772 5.14211 5.32027 5.37492 5.43960 5.50581 5.67487 5.77954 5.80327 5.88612 5.92967 6.01594 6.25873 6.42748 6.61171 7.01052 7.53884 7.68297 8.00332 8.05194 8.16317 8.60459 9.20138 9.76379 11.25021 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.007976 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.464925 B = 3509.879544 C = 4394.321270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.064 0.936 4 C 0.033 3.967 5 C -0.488 4.488 6 H 0.057 0.943 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.662 5.662 14 C 0.071 3.929 15 C -0.085 4.085 16 C -0.056 4.056 17 S -0.329 6.329 18 C -0.074 4.074 19 H 0.056 0.944 20 H 0.037 0.963 21 H 0.051 0.949 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.258 0.742 25 H 0.332 0.668 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 4.050 -12.710 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.527 4.527 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.292 5.292 14 C -0.061 4.061 15 C -0.105 4.105 16 C -0.204 4.204 17 S -0.102 6.102 18 C -0.223 4.223 19 H 0.075 0.925 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.149 0.851 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.830 3.601 -13.611 14.361 hybrid contribution -0.357 0.446 0.780 0.967 sum -3.188 4.047 -12.831 13.826 Atomic orbital electron populations 1.22557 0.99525 1.01224 1.00611 1.21795 0.89864 0.98143 0.92207 0.91778 1.19108 0.96211 0.95407 0.89719 1.21098 0.91893 1.32904 1.06805 0.92445 1.25004 0.97926 0.95940 0.96065 1.69948 1.35276 1.36947 1.12367 0.86716 0.86482 0.77933 0.77134 1.20576 1.21645 1.20383 1.60526 1.57874 1.08483 1.02355 1.21956 0.98695 0.95703 0.89730 1.22492 0.94748 0.99820 0.93446 1.24370 0.99374 1.07156 0.89457 1.88917 1.35420 1.72336 1.13570 1.24331 0.97876 1.02071 0.98016 0.92474 0.94434 0.93007 0.96506 0.96501 0.93283 0.85082 0.95527 0.90818 0.87449 0.87687 0.88040 0.88919 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.86 9.16 37.16 0.34 -2.52 16 2 C 0.09 1.70 2.53 -67.71 -0.17 1.53 16 3 H 0.06 1.25 7.80 -51.93 -0.40 0.85 16 4 C 0.03 0.82 4.65 -27.89 -0.13 0.69 16 5 C -0.49 -13.51 8.84 -34.44 -0.30 -13.81 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.66 -11.27 5.96 -106.73 -0.64 -11.91 16 14 C 0.07 0.95 5.26 -3.83 -0.02 0.93 16 15 C -0.08 -1.01 3.57 -90.57 -0.32 -1.33 16 16 C -0.06 -0.73 7.49 37.18 0.28 -0.46 16 17 S -0.33 -4.40 24.80 -107.50 -2.67 -7.06 16 18 C -0.07 -0.78 7.50 37.18 0.28 -0.50 16 19 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 20 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 21 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.33 5.27 8.47 -39.29 -0.33 4.93 16 26 H 0.03 0.33 7.44 -51.93 -0.39 -0.06 16 27 H 0.07 1.03 7.81 -51.93 -0.41 0.63 16 28 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.10 1.38 7.94 -51.93 -0.41 0.96 16 30 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 277.42 15.07 4.18 4.18 Total: -1.00 -29.82 277.42 -8.80 -38.63 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.25 Total: -0.12 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.15 Total: -14.13 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.10 Total: -38.44 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -2.67 Total: -7.06 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.82 -8.80 -38.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697978610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.701 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds