Wall clock time and date at job start Mon Mar 30 2020 03:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.50695 * 109.47112 * 184.99734 * 4 2 1 6 6 H 1.07998 * 120.00102 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00385 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99790 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00403 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47210 * 59.99646 * 9 7 5 11 11 H 1.48500 * 109.47090 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47176 * 299.99727 * 9 7 5 13 13 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 14 14 C 1.46892 * 111.00363 * 85.00189 * 13 2 1 15 15 C 1.52993 * 109.47679 * 179.97438 * 14 13 2 16 16 C 1.53051 * 113.15166 * 275.54756 * 15 14 13 17 17 S 1.81493 * 89.86326 * 211.86261 * 16 15 14 18 18 C 1.53046 * 113.15681 * 175.11652 * 15 14 13 19 19 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 20 20 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 21 21 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 23 23 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 24 24 H 0.96992 * 120.00329 * 180.02562 * 8 7 5 25 25 H 1.00903 * 111.00184 * 321.04231 * 13 2 1 26 26 H 1.08999 * 109.46953 * 300.00101 * 14 13 2 27 27 H 1.09001 * 109.47256 * 59.99520 * 14 13 2 28 28 H 1.09003 * 112.49423 * 45.32418 * 15 14 13 29 29 H 1.08996 * 113.14681 * 327.10961 * 16 15 14 30 30 H 1.09000 * 113.14643 * 96.59055 * 16 15 14 31 31 H 1.08999 * 113.14650 * 263.40672 * 18 15 14 32 32 H 1.09001 * 113.14490 * 32.84622 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0855 0.5395 7 6 4.2306 -1.1936 2.3577 8 7 3.5766 -1.8378 3.2994 9 14 6.0921 -1.0612 2.4367 10 1 6.4846 0.3698 2.4971 11 1 6.5871 -1.7613 3.6491 12 1 6.6846 -1.6863 1.2269 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2225 -2.3469 15 6 2.5961 -0.5328 -3.5742 16 6 4.1234 -0.6049 -3.6408 17 16 4.0411 -0.5824 -5.4537 18 6 2.5827 0.3122 -4.8501 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6055 -0.2618 2.1369 23 1 1.7517 -1.7715 1.2056 24 1 4.0609 -2.2446 4.0348 25 1 1.4495 -1.4979 -1.4101 26 1 1.0871 0.6163 -2.5525 27 1 2.7588 1.0461 -2.1183 28 1 2.1155 -1.5034 -3.6979 29 1 4.6125 0.2750 -3.2231 30 1 4.5262 -1.5356 -3.2412 31 1 1.6961 0.1492 -5.4628 32 1 2.7737 1.3694 -4.6658 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697978610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:56 Heat of formation + Delta-G solvation = -12.623794 kcal Electronic energy + Delta-G solvation = -12600.429904 eV Core-core repulsion = 10493.459205 eV Total energy + Delta-G solvation = -2106.970699 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.01892 -37.00201 -34.61114 -31.63869 -29.06525 -27.17455 -26.14142 -24.77773 -21.83506 -20.92662 -18.34023 -17.46338 -16.70338 -16.49189 -16.17283 -15.67423 -14.78674 -14.31901 -14.00415 -13.82307 -13.72124 -13.39827 -13.23502 -13.08732 -12.69827 -12.48187 -12.36833 -12.13137 -11.85102 -11.61616 -11.27305 -11.05875 -10.79101 -10.44841 -8.91763 -8.83597 -8.06525 -6.10733 0.88763 0.99640 1.43307 1.45595 1.52634 2.49458 3.18963 3.29559 3.66252 3.91884 4.11539 4.30892 4.37706 4.44110 4.53869 4.57005 4.64009 4.74967 4.77985 4.86495 5.06285 5.23935 5.31445 5.34702 5.56547 5.73644 5.94555 6.38205 6.54956 6.80816 7.04320 7.54789 9.05537 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.007976 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.464925 B = 3509.879544 C = 4394.321270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 H 0.061 0.939 4 C 0.035 3.965 5 C -0.495 4.495 6 H 0.059 0.941 7 C -0.008 4.008 8 N -0.943 5.943 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.682 5.682 14 C 0.078 3.922 15 C -0.076 4.076 16 C -0.056 4.056 17 S -0.372 6.372 18 C -0.051 4.051 19 H 0.052 0.948 20 H 0.068 0.932 21 H 0.051 0.949 22 H -0.011 1.011 23 H -0.010 1.010 24 H 0.257 0.743 25 H 0.338 0.662 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 5.102 -14.181 15.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 H 0.079 0.921 4 C -0.002 4.002 5 C -0.534 4.534 6 H 0.078 0.922 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.313 5.313 14 C -0.054 4.054 15 C -0.096 4.096 16 C -0.204 4.204 17 S -0.146 6.146 18 C -0.200 4.200 19 H 0.071 0.929 20 H 0.087 0.913 21 H 0.070 0.930 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.066 0.934 25 H 0.156 0.844 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.138 4.664 -15.107 16.119 hybrid contribution -0.280 0.118 1.230 1.266 sum -3.418 4.783 -13.878 15.071 Atomic orbital electron populations 1.22417 0.96784 1.01724 1.01974 1.21424 0.91986 0.96892 0.90624 0.92073 1.19017 0.95023 0.94233 0.91938 1.21493 0.93466 1.32010 1.06414 0.92244 1.25854 1.02666 0.95874 0.95933 1.70085 1.37067 1.38231 1.13122 0.85679 0.80918 0.78327 0.77124 1.19481 1.21591 1.19745 1.60330 1.58408 1.09528 1.03055 1.21935 0.99938 0.94884 0.88607 1.22420 0.93386 1.00248 0.93553 1.24400 1.00585 1.06336 0.89055 1.89123 1.37996 1.73451 1.14013 1.24335 0.96838 1.02154 0.96634 0.92864 0.91264 0.92976 0.99229 0.99206 0.93400 0.84388 0.93088 0.91352 0.87114 0.87694 0.89630 0.86801 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 9.16 71.98 0.66 -4.37 16 2 C 0.10 3.72 2.53 44.92 0.11 3.84 16 3 H 0.06 2.30 7.80 -2.39 -0.02 2.28 16 4 C 0.04 1.79 4.65 29.85 0.14 1.93 16 5 C -0.50 -27.57 8.84 25.60 0.23 -27.34 16 6 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 7 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 8 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 9 Si 0.95 45.21 29.54 68.60 2.03 47.23 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.68 -22.08 5.96 -491.59 -2.93 -25.02 16 14 C 0.08 1.85 5.26 86.30 0.45 2.30 16 15 C -0.08 -1.60 3.57 -10.76 -0.04 -1.64 16 16 C -0.06 -1.40 7.49 72.00 0.54 -0.86 16 17 S -0.37 -9.40 24.80 -56.49 -1.40 -10.80 16 18 C -0.05 -0.91 7.50 72.00 0.54 -0.37 16 19 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 20 H 0.07 1.63 7.45 -2.39 -0.02 1.61 16 21 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 22 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 23 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.34 10.16 8.47 -89.69 -0.76 9.40 16 26 H 0.05 1.01 7.44 -2.39 -0.02 0.99 16 27 H 0.07 1.73 7.81 -2.39 -0.02 1.71 16 28 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.10 2.62 7.94 -2.39 -0.02 2.60 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.12 1.80 8.12 -2.39 -0.02 1.78 16 Total: -1.00 -64.41 277.42 1.40 -63.01 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.32 Total: 9.71 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 3.10 Total: -26.50 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -2.65 Total: -82.66 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.40 Total: -10.80 kcal Total: -64.41 1.40 -63.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697978610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.390 kcal (2) G-P(sol) polarization free energy of solvation -64.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds