Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00434 * 2 1 4 4 H 1.48493 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47077 * 300.00494 * 3 2 1 6 6 H 1.48502 * 109.46704 * 59.99989 * 3 2 1 7 7 C 1.37884 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99762 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46991 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46991 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47237 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00310 * 180.02562 * 13 12 11 15 15 C 1.53042 * 113.15239 * 205.00503 * 14 13 12 16 16 S 1.81425 * 89.93235 * 211.83017 * 15 14 13 17 17 C 1.53039 * 113.15200 * 104.62654 * 14 13 12 18 18 H 0.97002 * 119.99774 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47001 * 60.00285 * 9 7 2 20 20 H 1.08997 * 109.47188 * 300.00898 * 9 7 2 21 21 H 1.08998 * 109.46922 * 60.00588 * 10 9 7 22 22 H 1.09005 * 109.47067 * 300.00204 * 10 9 7 23 23 H 1.08998 * 109.47167 * 60.00297 * 11 10 9 24 24 H 1.09005 * 109.47021 * 299.99791 * 11 10 9 25 25 H 1.08998 * 109.46922 * 60.00147 * 12 11 10 26 26 H 1.08998 * 109.47175 * 300.00154 * 12 11 10 27 27 H 1.00904 * 110.99737 * 56.04413 * 13 12 11 28 28 H 1.09002 * 112.52154 * 334.81200 * 14 13 12 29 29 H 1.09002 * 113.14805 * 327.10968 * 15 14 13 30 30 H 1.09003 * 113.15177 * 96.55411 * 15 14 13 31 31 H 1.08997 * 113.14758 * 263.40700 * 17 14 13 32 32 H 1.08997 * 113.15183 * 32.85352 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4742 -6.1501 -0.0018 13 7 1.7397 -7.4223 -0.0018 14 6 2.6641 -8.5639 -0.0018 15 6 2.0516 -9.8341 -0.5966 16 16 3.0568 -10.8427 0.5275 17 6 2.7666 -9.2552 1.3597 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6245 -2.5571 0.8896 21 1 2.8717 -3.6045 0.8895 22 1 2.8718 -3.6044 -0.8905 23 1 0.8537 -5.0446 -0.8914 24 1 0.8531 -5.0451 0.8886 25 1 3.1009 -6.0928 0.8882 26 1 3.1009 -6.0919 -0.8918 27 1 1.1029 -7.4721 -0.7830 28 1 3.6350 -8.3151 -0.4303 29 1 0.9813 -9.9218 -0.4098 30 1 2.3051 -9.9810 -1.6465 31 1 3.6194 -8.9175 1.9485 32 1 1.8343 -9.2307 1.9240 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702018336.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = -2.576353 kcal Electronic energy + Delta-G solvation = -11929.998501 eV Core-core repulsion = 9823.463492 eV Total energy + Delta-G solvation = -2106.535009 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.07563 -35.17830 -33.09436 -31.33562 -27.84091 -26.55254 -24.34549 -21.49017 -21.30698 -19.93803 -16.93107 -16.23888 -16.07794 -15.65819 -14.66208 -14.45718 -14.14141 -13.17763 -13.15753 -12.66445 -12.53725 -12.06816 -11.69617 -11.59849 -11.07937 -11.02588 -10.64020 -10.61615 -10.46914 -10.35961 -9.65581 -9.27181 -9.00383 -8.65052 -8.33765 -8.06208 -5.98722 -4.00904 1.53258 1.68132 3.31360 3.38795 3.42965 4.00524 4.03275 4.47152 4.61962 4.80006 5.09773 5.13112 5.32576 5.36428 5.37265 5.42047 5.61296 5.83824 6.10082 6.18302 6.46723 6.78255 6.85687 6.95178 7.17618 7.21808 7.70248 7.85375 8.02256 8.45065 9.06870 9.63140 11.12647 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.107920 B = 0.003838 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.389899 B = 7292.836059 C = 7407.020553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.057 3.943 13 N -0.675 5.675 14 C 0.080 3.920 15 C -0.087 4.087 16 S -0.302 6.302 17 C -0.067 4.067 18 H 0.259 0.741 19 H 0.014 0.986 20 H 0.016 0.984 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.347 0.653 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -17.419 -0.672 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.072 4.072 13 N -0.308 5.308 14 C -0.032 4.032 15 C -0.236 4.236 16 S -0.078 6.078 17 C -0.216 4.216 18 H 0.069 0.931 19 H 0.033 0.967 20 H 0.034 0.966 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.167 0.833 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.455 -18.609 0.150 19.135 hybrid contribution 0.211 1.918 -0.976 2.163 sum 4.667 -16.691 -0.826 17.351 Atomic orbital electron populations 1.69976 1.06051 1.26427 1.51084 1.25038 0.94848 0.99260 0.95417 0.86556 0.80125 0.83876 0.77572 1.19760 1.21036 1.21015 1.21328 0.93058 0.91201 1.50249 0.92711 1.19100 0.94033 0.91366 0.97180 1.21593 0.99102 0.93903 1.00140 1.21648 0.97851 0.93796 1.02105 1.22184 0.96369 0.88161 1.00448 1.60651 1.18973 1.01294 1.49886 1.22953 0.96678 0.89943 0.93639 1.24640 1.02644 0.93975 1.02344 1.89003 1.68124 1.25977 1.24663 1.24593 1.05997 0.90016 1.00988 0.93093 0.96714 0.96588 0.93390 0.93635 0.92643 0.91549 0.91021 0.95087 0.83328 0.88995 0.87000 0.88664 0.88822 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.12 -1.86 5.47 -26.73 -0.15 -2.01 16 12 C 0.06 0.73 5.53 -3.82 -0.02 0.71 16 13 N -0.68 -7.21 6.52 -117.63 -0.77 -7.98 16 14 C 0.08 0.74 3.80 -67.67 -0.26 0.49 16 15 C -0.09 -0.73 7.51 37.18 0.28 -0.45 16 16 S -0.30 -3.20 24.80 -107.50 -2.67 -5.86 16 17 C -0.07 -0.64 7.76 37.18 0.29 -0.35 16 18 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 19 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 27 H 0.35 3.34 8.52 -39.29 -0.33 3.01 16 28 H 0.09 0.87 7.86 -51.93 -0.41 0.46 16 29 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 280.36 15.07 4.22 4.22 Total: -1.00 -30.06 280.36 -9.39 -39.45 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.36 Total: -2.97 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -0.54 Total: -17.19 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.03 Total: -34.33 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.67 Total: -5.86 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.06 -9.39 -39.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702018336.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.873 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds