Wall clock time and date at job start Mon Mar 30 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00434 * 2 1 4 4 H 1.48493 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47077 * 300.00494 * 3 2 1 6 6 H 1.48502 * 109.46704 * 59.99989 * 3 2 1 7 7 C 1.37884 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99762 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46991 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46991 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47237 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00310 * 180.02562 * 13 12 11 15 15 C 1.53042 * 113.15239 * 205.00503 * 14 13 12 16 16 S 1.81425 * 89.93235 * 211.83017 * 15 14 13 17 17 C 1.53039 * 113.15200 * 104.62654 * 14 13 12 18 18 H 0.97002 * 119.99774 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47001 * 60.00285 * 9 7 2 20 20 H 1.08997 * 109.47188 * 300.00898 * 9 7 2 21 21 H 1.08998 * 109.46922 * 60.00588 * 10 9 7 22 22 H 1.09005 * 109.47067 * 300.00204 * 10 9 7 23 23 H 1.08998 * 109.47167 * 60.00297 * 11 10 9 24 24 H 1.09005 * 109.47021 * 299.99791 * 11 10 9 25 25 H 1.08998 * 109.46922 * 60.00147 * 12 11 10 26 26 H 1.08998 * 109.47175 * 300.00154 * 12 11 10 27 27 H 1.00904 * 110.99737 * 56.04413 * 13 12 11 28 28 H 1.09002 * 112.52154 * 334.81200 * 14 13 12 29 29 H 1.09002 * 113.14805 * 327.10968 * 15 14 13 30 30 H 1.09003 * 113.15177 * 96.55411 * 15 14 13 31 31 H 1.08997 * 113.14758 * 263.40700 * 17 14 13 32 32 H 1.08997 * 113.15183 * 32.85352 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4742 -6.1501 -0.0018 13 7 1.7397 -7.4223 -0.0018 14 6 2.6641 -8.5639 -0.0018 15 6 2.0516 -9.8341 -0.5966 16 16 3.0568 -10.8427 0.5275 17 6 2.7666 -9.2552 1.3597 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6245 -2.5571 0.8896 21 1 2.8717 -3.6045 0.8895 22 1 2.8718 -3.6044 -0.8905 23 1 0.8537 -5.0446 -0.8914 24 1 0.8531 -5.0451 0.8886 25 1 3.1009 -6.0928 0.8882 26 1 3.1009 -6.0919 -0.8918 27 1 1.1029 -7.4721 -0.7830 28 1 3.6350 -8.3151 -0.4303 29 1 0.9813 -9.9218 -0.4098 30 1 2.3051 -9.9810 -1.6465 31 1 3.6194 -8.9175 1.9485 32 1 1.8343 -9.2307 1.9240 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702018336.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:26 Heat of formation + Delta-G solvation = -21.483982 kcal Electronic energy + Delta-G solvation = -11930.818397 eV Core-core repulsion = 9823.463492 eV Total energy + Delta-G solvation = -2107.354905 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.93378 -36.65379 -34.84689 -32.86653 -29.47635 -27.28208 -26.09016 -23.00219 -22.22460 -21.42822 -18.42215 -17.72696 -16.91829 -16.69464 -16.42681 -15.84012 -15.20011 -14.47838 -14.32312 -13.85645 -13.78721 -13.45167 -13.07813 -13.06405 -12.79943 -12.31990 -12.19411 -12.07781 -11.77540 -11.47229 -11.34319 -11.24626 -10.86862 -10.54442 -9.50803 -8.88552 -8.18840 -6.29902 0.82249 0.90985 1.40757 1.41028 1.54441 2.41948 3.13476 3.14158 3.30385 3.92557 4.02963 4.17044 4.28769 4.43550 4.46967 4.56306 4.65311 4.68736 4.79168 4.94719 4.97438 5.28146 5.30671 5.40075 5.58172 5.81217 5.89308 5.99196 6.27759 6.39806 6.88383 7.39515 8.93125 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.107920 B = 0.003838 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.389899 B = 7292.836059 C = 7407.020553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.021 3.979 10 C -0.098 4.098 11 C -0.106 4.106 12 C 0.069 3.931 13 N -0.677 5.677 14 C 0.084 3.916 15 C -0.070 4.070 16 S -0.347 6.347 17 C -0.059 4.059 18 H 0.263 0.737 19 H -0.009 1.009 20 H -0.011 1.011 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.355 0.645 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -17.543 -1.044 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.016 4.016 10 C -0.136 4.136 11 C -0.144 4.144 12 C -0.060 4.060 13 N -0.310 5.310 14 C -0.028 4.028 15 C -0.218 4.218 16 S -0.123 6.123 17 C -0.208 4.208 18 H 0.072 0.928 19 H 0.009 0.991 20 H 0.007 0.993 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.176 0.824 28 H 0.114 0.886 29 H 0.139 0.861 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.477 -18.753 -0.225 19.538 hybrid contribution -0.154 1.941 -0.856 2.127 sum 5.323 -16.812 -1.082 17.668 Atomic orbital electron populations 1.70105 1.07817 1.27661 1.51895 1.26010 0.95791 1.03439 0.94826 0.85399 0.79103 0.78773 0.77777 1.18538 1.20349 1.20415 1.21795 0.93581 0.92590 1.50201 0.92213 1.19042 0.94575 0.93313 0.94670 1.21404 0.97972 0.93768 1.00488 1.21464 0.98062 0.93186 1.01702 1.21936 0.95348 0.87724 1.00967 1.60549 1.19178 1.00773 1.50542 1.22931 0.96638 0.89586 0.93608 1.24630 1.02604 0.92078 1.02508 1.89220 1.69043 1.27399 1.26671 1.24598 1.06126 0.88923 1.01186 0.92810 0.99102 0.99251 0.93136 0.93043 0.92532 0.92551 0.90960 0.94163 0.82436 0.88604 0.86082 0.87228 0.88523 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 3 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.10 -3.88 5.15 30.59 0.16 -3.72 16 11 C -0.11 -3.29 5.47 30.59 0.17 -3.13 16 12 C 0.07 1.61 5.53 86.30 0.48 2.09 16 13 N -0.68 -12.85 6.52 -526.08 -3.43 -16.28 16 14 C 0.08 1.37 3.80 44.94 0.17 1.54 16 15 C -0.07 -1.00 7.51 72.00 0.54 -0.46 16 16 S -0.35 -6.92 24.80 -56.49 -1.40 -8.32 16 17 C -0.06 -1.03 7.76 72.00 0.56 -0.47 16 18 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 19 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 20 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16 21 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 22 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 27 H 0.35 5.92 8.52 -89.69 -0.76 5.15 16 28 H 0.10 1.55 7.86 -2.39 -0.02 1.53 16 29 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -64.24 280.36 0.71 -63.53 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.31 Total: 5.22 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 2.92 Total: -33.52 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -3.15 Total: -73.24 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -6.92 SS G_CDS: -1.40 Total: -8.32 kcal Total: -64.24 0.71 -63.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702018336.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.047 kcal (2) G-P(sol) polarization free energy of solvation -64.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds