Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46904 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00202 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47525 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47599 * 179.97438 * 12 11 10 14 14 H 1.08999 * 108.84834 * 305.69941 * 13 12 11 15 15 C 1.52939 * 108.89196 * 187.12138 * 13 12 11 16 16 C 1.54988 * 109.04679 * 208.99319 * 15 13 12 17 17 S 1.83989 * 100.82003 * 41.60790 * 16 15 13 18 18 C 1.53711 * 108.88510 * 64.27515 * 13 12 11 19 19 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 21 21 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 22 22 H 1.00906 * 110.99787 * 303.95587 * 10 9 7 23 23 H 1.08999 * 109.46951 * 300.00194 * 11 10 9 24 24 H 1.09004 * 109.47188 * 59.99629 * 11 10 9 25 25 H 1.09007 * 109.46865 * 299.99689 * 12 11 10 26 26 H 1.09004 * 109.47341 * 59.99538 * 12 11 10 27 27 H 1.09002 * 109.60247 * 329.03704 * 15 13 12 28 28 H 1.09003 * 109.59902 * 89.16882 * 15 13 12 29 29 H 1.09001 * 111.23697 * 283.70619 * 16 15 13 30 30 H 1.09000 * 111.15041 * 159.47831 * 16 15 13 31 31 H 1.09005 * 110.33827 * 242.48910 * 18 13 12 32 32 H 1.08992 * 110.34350 * 4.64208 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2056 -3.6158 0.0041 11 6 1.5053 -4.9071 0.0090 12 6 2.5301 -6.0431 0.0082 13 6 1.8008 -7.3880 0.0140 14 1 1.1067 -7.4086 0.8541 15 6 2.8276 -8.5074 0.1926 16 6 2.3021 -9.7909 -0.4992 17 16 1.6046 -9.0868 -2.0494 18 6 1.0042 -7.5276 -1.2932 19 1 -0.4850 0.8401 0.0004 20 1 0.6281 -2.5552 0.8979 21 1 0.6206 -2.5586 -0.8820 22 1 2.8375 -3.5504 -0.7799 23 1 0.8835 -4.9798 0.9013 24 1 0.8773 -4.9832 -0.8787 25 1 3.1523 -5.9706 -0.8839 26 1 3.1579 -5.9668 0.8961 27 1 3.7748 -8.2099 -0.2574 28 1 2.9756 -8.7017 1.2549 29 1 1.5269 -10.2718 0.0974 30 1 3.1160 -10.4835 -0.7136 31 1 -0.0628 -7.5958 -1.0811 32 1 1.2058 -6.6830 -1.9518 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704785859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = -23.428649 kcal Electronic energy + Delta-G solvation = -12191.733457 eV Core-core repulsion = 10084.294225 eV Total energy + Delta-G solvation = -2107.439232 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.73015 -35.03556 -32.59901 -30.81012 -28.25174 -26.29256 -24.49888 -21.82700 -21.11705 -19.99555 -16.82009 -16.33457 -15.99704 -14.93377 -14.49462 -14.37821 -13.95023 -13.35728 -12.99349 -12.59897 -12.44586 -12.00932 -11.94882 -11.42841 -11.33772 -10.95280 -10.88775 -10.66785 -10.55301 -10.47219 -9.98485 -9.82335 -9.17568 -8.49052 -7.81140 -7.31151 -6.04070 -4.06194 1.76794 2.24148 3.31543 3.37453 3.42165 4.35689 4.43279 4.50535 4.77743 4.93653 5.01027 5.26683 5.30233 5.32123 5.43742 5.49880 5.63642 5.70394 5.83611 5.94555 5.98780 6.14423 6.44173 6.49534 7.23654 7.40587 7.77575 8.11724 8.37711 8.60225 9.03190 9.58889 11.07125 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.077633 B = 0.004645 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.585399 B = 6026.643895 C = 6149.839077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.692 5.692 11 C 0.057 3.943 12 C -0.108 4.108 13 C -0.095 4.095 14 H 0.080 0.920 15 C -0.120 4.120 16 C -0.067 4.067 17 S -0.314 6.314 18 C -0.060 4.060 19 H 0.261 0.739 20 H 0.027 0.973 21 H -0.014 1.014 22 H 0.328 0.672 23 H 0.062 0.938 24 H 0.019 0.981 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -17.188 -0.270 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.322 5.322 11 C -0.073 4.073 12 C -0.146 4.146 13 C -0.115 4.115 14 H 0.098 0.902 15 C -0.159 4.159 16 C -0.215 4.215 17 S -0.088 6.088 18 C -0.208 4.208 19 H 0.071 0.929 20 H 0.045 0.955 21 H 0.004 0.996 22 H 0.144 0.856 23 H 0.081 0.919 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.485 -17.466 -0.717 17.825 hybrid contribution -0.060 1.344 0.213 1.362 sum 3.425 -16.122 -0.504 16.490 Atomic orbital electron populations 1.69966 1.06115 1.26810 1.50905 1.25001 0.94882 0.99411 0.95304 0.86474 0.79800 0.82954 0.78057 1.20692 1.21211 1.19741 1.21198 0.93534 0.90271 1.50371 0.91945 1.19554 0.90602 0.87447 0.95740 1.60676 1.21463 1.01370 1.48663 1.21959 0.95312 0.90347 0.99728 1.21713 0.98289 0.91843 1.02798 1.21651 0.96944 0.96234 0.96708 0.90169 1.22432 0.99824 0.92084 1.01566 1.24296 1.02668 0.99896 0.94624 1.87831 1.77656 1.24105 1.19245 1.24153 1.02247 0.95931 0.98420 0.92898 0.95497 0.99629 0.85590 0.91923 0.96340 0.91830 0.90833 0.90139 0.90109 0.89341 0.87870 0.89315 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.76 9.32 -34.44 -0.32 -15.08 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.13 5.44 -4.98 -0.03 5.10 16 10 N -0.69 -14.84 6.49 -115.06 -0.75 -15.59 16 11 C 0.06 0.97 5.46 -3.83 -0.02 0.95 16 12 C -0.11 -1.42 4.50 -26.73 -0.12 -1.54 16 13 C -0.09 -1.04 2.68 -90.28 -0.24 -1.28 16 14 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.12 -1.10 5.78 -25.71 -0.15 -1.24 16 16 C -0.07 -0.59 7.52 38.21 0.29 -0.30 16 17 S -0.31 -3.79 23.22 -107.50 -2.50 -6.28 16 18 C -0.06 -0.70 6.33 37.53 0.24 -0.46 16 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 21 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 22 H 0.33 6.71 8.72 -39.29 -0.34 6.37 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.02 0.32 6.79 -51.93 -0.35 -0.03 16 25 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 27 H 0.08 0.76 7.83 -51.93 -0.41 0.35 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 1.31 6.75 -51.93 -0.35 0.96 16 LS Contribution 273.96 15.07 4.13 4.13 Total: -1.00 -30.34 273.96 -9.07 -39.42 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.22 Total: 0.27 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.45 Total: -12.37 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.01 Total: -41.92 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -2.50 Total: -6.28 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.34 -9.07 -39.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704785859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.990 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds