Wall clock time and date at job start Mon Mar 30 2020 02:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46898 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99616 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47125 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47288 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.60432 * 53.88470 * 13 12 11 15 15 C 1.53854 * 109.61081 * 174.04999 * 13 12 11 16 16 C 1.55132 * 106.90078 * 167.17527 * 15 13 12 17 17 S 1.83462 * 102.20509 * 317.88196 * 16 15 13 18 18 C 1.54280 * 109.60562 * 293.54964 * 13 12 11 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 21 21 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 22 22 H 1.00898 * 111.00220 * 56.04491 * 10 9 7 23 23 H 1.08994 * 109.47484 * 300.00078 * 11 10 9 24 24 H 1.09008 * 109.47071 * 59.99938 * 11 10 9 25 25 H 1.08990 * 109.47654 * 300.00168 * 12 11 10 26 26 H 1.09004 * 109.47006 * 60.00733 * 12 11 10 27 27 H 1.08996 * 109.97601 * 286.53849 * 15 13 12 28 28 H 1.09006 * 109.97596 * 47.81462 * 15 13 12 29 29 H 1.08998 * 110.86131 * 199.70820 * 16 15 13 30 30 H 1.08995 * 111.03284 * 76.13489 * 16 15 13 31 31 H 1.08994 * 110.40626 * 330.91921 * 18 13 12 32 32 H 1.08998 * 110.39778 * 93.22433 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2057 -3.6157 -0.0131 11 6 1.5054 -4.9070 -0.0128 12 6 2.5303 -6.0429 -0.0211 13 6 1.8009 -7.3880 -0.0215 14 1 1.0905 -7.4186 -0.8476 15 6 2.8212 -8.5286 -0.1800 16 6 2.0776 -9.8485 0.1539 17 16 1.0868 -9.3745 1.6233 18 6 1.0502 -7.5701 1.3140 19 1 -0.4850 -0.8400 0.0004 20 1 0.6281 -2.5591 0.8866 21 1 0.6207 -2.5548 -0.8933 22 1 2.8441 -3.5507 0.7655 23 1 0.8848 -4.9836 0.8799 24 1 0.8762 -4.9793 -0.9000 25 1 3.1505 -5.9663 -0.9140 26 1 3.1597 -5.9709 0.8659 27 1 3.1903 -8.5582 -1.2051 28 1 3.6517 -8.3841 0.5111 29 1 2.7845 -10.6403 0.4016 30 1 1.4304 -10.1518 -0.6691 31 1 1.5634 -7.0370 2.1142 32 1 0.0223 -7.2193 1.2229 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704785873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:51 Heat of formation + Delta-G solvation = -29.118020 kcal Electronic energy + Delta-G solvation = -12197.023817 eV Core-core repulsion = 10089.337875 eV Total energy + Delta-G solvation = -2107.685942 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.74838 -35.25836 -32.82217 -30.79519 -28.23549 -25.94380 -24.25618 -22.06756 -21.32370 -20.23456 -16.90478 -16.75007 -16.06128 -14.87942 -14.58896 -14.08774 -13.79852 -13.63691 -13.20870 -12.63356 -12.54629 -12.13300 -12.03702 -11.64393 -11.28767 -11.04913 -10.84136 -10.78395 -10.59957 -10.45294 -10.08083 -9.97800 -8.65721 -8.43160 -7.85573 -7.46356 -6.39931 -4.09122 1.68335 2.22938 3.43605 3.46177 3.64824 4.31393 4.41915 4.52953 4.63688 4.89127 4.98521 5.11365 5.27665 5.31910 5.37299 5.46853 5.54382 5.58848 5.72829 5.83041 5.86603 6.01865 6.31964 6.37012 6.90944 7.11664 7.73867 8.11540 8.42059 8.54636 8.84460 9.62959 10.99898 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.081744 B = 0.004588 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.448981 B = 6101.684588 C = 6276.577847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 1.074 2.926 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.597 4.597 8 H 0.056 0.944 9 C 0.183 3.817 10 N -0.685 5.685 11 C 0.056 3.944 12 C -0.104 4.104 13 C -0.095 4.095 14 H 0.083 0.917 15 C -0.123 4.123 16 C -0.070 4.070 17 S -0.312 6.312 18 C -0.062 4.062 19 H 0.267 0.733 20 H -0.024 1.024 21 H 0.018 0.982 22 H 0.330 0.670 23 H 0.018 0.982 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -17.240 0.382 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.902 3.098 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.635 4.635 8 H 0.074 0.926 9 C 0.056 3.944 10 N -0.315 5.315 11 C -0.074 4.074 12 C -0.144 4.144 13 C -0.115 4.115 14 H 0.101 0.899 15 C -0.162 4.162 16 C -0.218 4.218 17 S -0.086 6.086 18 C -0.210 4.210 19 H 0.077 0.923 20 H -0.007 1.007 21 H 0.036 0.964 22 H 0.147 0.853 23 H 0.037 0.963 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.873 -16.242 0.579 16.707 hybrid contribution 0.214 -1.103 0.027 1.124 sum 4.087 -17.344 0.606 17.830 Atomic orbital electron populations 1.70798 1.06899 1.30415 1.46828 1.25891 0.96487 1.02816 0.93752 0.83469 0.74777 0.74983 0.76563 1.20785 1.21446 1.21331 1.22006 0.94824 0.91290 1.55422 0.92572 1.19660 0.91257 0.89038 0.94450 1.60573 1.20621 1.01024 1.49246 1.21955 0.95423 0.90330 0.99698 1.21602 0.98187 0.91670 1.02899 1.22002 0.97111 0.95959 0.96425 0.89852 1.22627 0.98685 0.91467 1.03384 1.24223 1.00042 1.00546 0.96977 1.87569 1.73195 1.10179 1.37676 1.24157 1.04390 0.92054 1.00369 0.92323 1.00675 0.96426 0.85311 0.96350 0.91911 0.90657 0.91861 0.89626 0.90175 0.88168 0.89233 0.88768 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.20 13.65 55.43 0.76 -27.44 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 3 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.60 -17.29 9.32 -34.44 -0.32 -17.61 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.18 4.83 4.75 -4.97 -0.02 4.81 16 10 N -0.68 -14.72 6.49 -115.06 -0.75 -15.46 16 11 C 0.06 0.95 5.52 -3.82 -0.02 0.93 16 12 C -0.10 -1.35 4.84 -26.73 -0.13 -1.48 16 13 C -0.09 -1.02 2.58 -89.50 -0.23 -1.26 16 14 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 15 C -0.12 -1.10 5.78 -25.16 -0.15 -1.25 16 16 C -0.07 -0.62 7.38 38.29 0.28 -0.34 16 17 S -0.31 -3.70 23.26 -107.50 -2.50 -6.20 16 18 C -0.06 -0.71 5.89 37.83 0.22 -0.49 16 19 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 20 H -0.02 -0.67 8.01 -51.93 -0.42 -1.09 16 21 H 0.02 0.50 8.00 -51.93 -0.42 0.08 16 22 H 0.33 6.80 8.72 -39.29 -0.34 6.46 16 23 H 0.02 0.31 7.44 -51.93 -0.39 -0.07 16 24 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.80 8.01 -51.93 -0.42 0.38 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.11 7.80 -51.93 -0.41 0.71 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -31.08 274.28 -9.17 -40.25 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.26 Total: 0.73 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.46 Total: -16.36 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.01 Total: -42.91 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.50 Total: -6.20 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.08 -9.17 -40.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704785873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.130 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds