Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 O 1.42896 * 112.94072 * 25.33104 * 5 3 2 7 7 C 1.53937 * 113.73169 * 253.76236 * 5 3 2 8 8 N 1.48193 * 86.10054 * 221.95818 * 7 5 3 9 9 C 1.46901 * 111.06977 * 137.51907 * 8 7 5 10 10 C 1.50705 * 109.47213 * 70.56737 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00008 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00319 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99793 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46756 * 60.00316 * 14 12 10 16 16 H 1.48499 * 109.46737 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46929 * 300.00182 * 14 12 10 18 18 C 1.47957 * 90.80074 * 24.60206 * 8 7 5 19 19 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 20 20 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 22 22 H 0.96703 * 113.99917 * 309.66391 * 6 5 3 23 23 H 1.08999 * 113.75732 * 336.23397 * 7 5 3 24 24 H 1.08994 * 113.76342 * 107.60922 * 7 5 3 25 25 H 1.09000 * 109.47293 * 190.56505 * 9 8 7 26 26 H 1.08998 * 109.47264 * 310.56468 * 9 8 7 27 27 H 0.97003 * 119.99750 * 179.97438 * 13 12 10 28 28 H 1.09003 * 113.76118 * 221.08932 * 18 8 7 29 29 H 1.08994 * 113.86258 * 89.73000 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1845 0.1163 -0.5641 7 6 4.1649 1.7005 1.3522 8 7 5.0874 2.5496 0.5622 9 6 5.2490 3.8719 1.1815 10 6 6.0449 3.7367 2.4542 11 1 6.3958 2.7656 2.7709 12 6 6.3258 4.8527 3.2134 13 7 5.8988 6.0352 2.8274 14 14 7.3117 4.6849 4.7913 15 1 8.6479 4.1159 4.4818 16 1 7.4751 6.0216 5.4172 17 1 6.5950 3.7838 5.7293 18 6 4.1170 2.6018 -0.5535 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 3.8620 -0.7188 -0.1985 23 1 3.4755 2.2662 1.9790 24 1 4.6612 0.8908 1.8872 25 1 5.7744 4.5338 0.4931 26 1 4.2680 4.2889 1.4090 27 1 6.0962 6.8203 3.3619 28 1 4.5750 2.5107 -1.5384 29 1 3.4129 3.4311 -0.4870 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714465691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -92.342241 kcal Electronic energy + Delta-G solvation = -14660.784203 eV Core-core repulsion = 11971.770687 eV Total energy + Delta-G solvation = -2689.013515 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.93632 -38.95877 -36.48283 -35.39365 -32.77699 -29.44371 -28.03668 -25.95301 -25.47573 -23.06390 -20.79808 -19.52897 -18.31517 -17.18657 -16.54825 -16.24293 -15.61299 -14.90230 -14.60354 -14.17829 -13.61292 -13.16092 -12.97342 -12.56636 -12.23511 -12.01315 -11.94766 -11.52223 -10.99827 -10.88495 -10.73952 -10.54930 -10.40139 -10.02447 -9.50529 -9.22804 -8.51585 -7.87972 -6.06646 -4.09361 2.10642 2.60481 3.32041 3.36053 3.39088 4.03464 4.38364 4.46523 4.59273 4.94563 4.99443 5.07183 5.29161 5.38777 5.58519 5.90804 6.07939 6.09569 6.23480 6.32140 6.53624 7.14888 7.50739 7.58161 7.77225 7.81200 8.03881 8.35435 8.97157 9.55155 11.04523 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048195 B = 0.007022 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.830967 B = 3986.531656 C = 4041.637648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.445 3.555 4 O -0.495 6.495 5 C 0.105 3.895 6 O -0.515 6.515 7 C 0.015 3.985 8 N -0.461 5.461 9 C 0.157 3.843 10 C -0.514 4.514 11 H 0.063 0.937 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.028 3.972 19 H 0.062 0.938 20 H 0.100 0.900 21 H 0.063 0.937 22 H 0.383 0.617 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.038 0.962 26 H 0.003 0.997 27 H 0.263 0.737 28 H 0.097 0.903 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 -11.666 -4.553 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.287 3.713 4 O -0.381 6.381 5 C 0.061 3.939 6 O -0.320 6.320 7 C -0.114 4.114 8 N -0.185 5.185 9 C 0.031 3.969 10 C -0.553 4.553 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.100 4.100 19 H 0.080 0.920 20 H 0.118 0.882 21 H 0.081 0.919 22 H 0.231 0.769 23 H 0.098 0.902 24 H 0.115 0.885 25 H 0.056 0.944 26 H 0.021 0.979 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.118 -10.906 -4.958 14.471 hybrid contribution -0.890 0.081 1.407 1.667 sum -9.008 -10.825 -3.551 14.524 Atomic orbital electron populations 1.23257 0.76575 1.03525 1.02591 1.86487 1.23448 1.33887 1.84067 1.24919 0.92703 0.81575 0.72144 1.90678 1.66480 1.36343 1.44625 1.23156 0.81360 0.90128 0.99207 1.86585 1.65062 1.14984 1.65347 1.24407 0.95122 0.99012 0.92854 1.68763 1.30464 1.15497 1.03738 1.20299 0.96658 0.84704 0.95189 1.21028 1.34152 0.94121 1.05954 0.91904 1.24995 0.96059 0.95149 0.98266 1.69950 1.45996 0.98503 1.39068 0.86521 0.80624 0.77094 0.82955 1.20054 1.21283 1.20238 1.24119 0.95148 0.91153 0.99622 0.91956 0.88159 0.91866 0.76854 0.90185 0.88514 0.94394 0.97901 0.92731 0.88516 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 15 2 O -0.36 -4.70 9.95 -44.01 -0.44 -5.13 15 3 C 0.45 7.14 7.28 36.01 0.26 7.40 15 4 O -0.50 -9.20 15.79 -18.75 -0.30 -9.50 15 5 C 0.11 1.77 1.86 -90.83 -0.17 1.60 15 6 O -0.51 -7.74 13.44 -47.36 -0.64 -8.37 15 7 C 0.02 0.30 6.87 -2.63 -0.02 0.28 15 8 N -0.46 -10.30 6.25 -239.47 -1.50 -11.79 15 9 C 0.16 4.17 4.58 -4.97 -0.02 4.15 15 10 C -0.51 -14.58 8.84 -34.44 -0.30 -14.89 15 11 H 0.06 1.75 7.80 -52.49 -0.41 1.34 15 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 13 N -0.90 -26.79 13.29 55.43 0.74 -26.05 15 14 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 15 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 15 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 18 C 0.03 0.54 7.27 -2.76 -0.02 0.52 15 19 H 0.06 0.60 8.13 -51.93 -0.42 0.18 15 20 H 0.10 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.06 0.63 8.13 -51.93 -0.42 0.20 15 22 H 0.38 4.06 8.59 45.56 0.39 4.45 15 23 H 0.08 1.63 7.74 -51.93 -0.40 1.22 15 24 H 0.10 1.72 8.14 -51.93 -0.42 1.29 15 25 H 0.04 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.00 0.09 7.70 -51.93 -0.40 -0.31 15 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 28 H 0.10 1.71 8.14 -51.93 -0.42 1.28 15 29 H 0.09 1.78 7.03 -51.93 -0.36 1.42 15 LS Contribution 258.29 15.07 3.89 3.89 Total: -1.00 -32.52 258.29 -5.42 -37.94 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -2.86 Total: 0.36 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 0.70 Total: 2.00 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.76 Total: -37.84 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.37 Total: -23.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.52 -5.42 -37.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714465691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.407 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds