Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 O 1.42896 * 112.94072 * 25.33104 * 5 3 2 7 7 C 1.53937 * 113.73169 * 253.76236 * 5 3 2 8 8 N 1.48193 * 86.10054 * 221.95818 * 7 5 3 9 9 C 1.46901 * 111.06977 * 137.51907 * 8 7 5 10 10 C 1.50705 * 109.47213 * 70.56737 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00008 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00319 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99793 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46756 * 60.00316 * 14 12 10 16 16 H 1.48499 * 109.46737 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46929 * 300.00182 * 14 12 10 18 18 C 1.47957 * 90.80074 * 24.60206 * 8 7 5 19 19 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 20 20 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 22 22 H 0.96703 * 113.99917 * 309.66391 * 6 5 3 23 23 H 1.08999 * 113.75732 * 336.23397 * 7 5 3 24 24 H 1.08994 * 113.76342 * 107.60922 * 7 5 3 25 25 H 1.09000 * 109.47293 * 190.56505 * 9 8 7 26 26 H 1.08998 * 109.47264 * 310.56468 * 9 8 7 27 27 H 0.97003 * 119.99750 * 179.97438 * 13 12 10 28 28 H 1.09003 * 113.76118 * 221.08932 * 18 8 7 29 29 H 1.08994 * 113.86258 * 89.73000 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1845 0.1163 -0.5641 7 6 4.1649 1.7005 1.3522 8 7 5.0874 2.5496 0.5622 9 6 5.2490 3.8719 1.1815 10 6 6.0449 3.7367 2.4542 11 1 6.3958 2.7656 2.7709 12 6 6.3258 4.8527 3.2134 13 7 5.8988 6.0352 2.8274 14 14 7.3117 4.6849 4.7913 15 1 8.6479 4.1159 4.4818 16 1 7.4751 6.0216 5.4172 17 1 6.5950 3.7838 5.7293 18 6 4.1170 2.6018 -0.5535 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 3.8620 -0.7188 -0.1985 23 1 3.4755 2.2662 1.9790 24 1 4.6612 0.8908 1.8872 25 1 5.7744 4.5338 0.4931 26 1 4.2680 4.2889 1.4090 27 1 6.0962 6.8203 3.3619 28 1 4.5750 2.5107 -1.5384 29 1 3.4129 3.4311 -0.4870 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714465691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -119.315778 kcal Electronic energy + Delta-G solvation = -14661.953863 eV Core-core repulsion = 11971.770687 eV Total energy + Delta-G solvation = -2690.183176 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.29045 -40.36377 -37.70573 -36.80970 -34.88001 -31.21457 -29.17326 -27.54743 -27.13458 -24.76733 -22.41199 -20.95689 -19.62183 -18.62418 -18.28981 -17.65410 -17.13040 -16.40065 -16.37427 -15.50931 -15.19149 -14.57964 -14.37607 -14.09655 -13.85857 -13.72398 -13.23424 -12.97485 -12.73601 -12.59040 -12.41744 -12.07220 -11.90587 -11.66941 -11.34810 -10.95206 -10.66752 -9.71259 -8.24782 -6.36532 0.80993 1.40590 1.44459 1.45226 1.52698 2.38477 2.67678 3.05828 3.09851 3.13576 3.69905 3.99385 4.27198 4.29982 4.34005 4.51413 4.53626 4.66868 4.76738 4.83456 5.02779 5.13320 5.45224 5.70192 6.00539 6.26150 6.40037 6.67554 6.77391 7.33530 8.87029 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048195 B = 0.007022 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.830967 B = 3986.531656 C = 4041.637648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.352 6.352 3 C 0.454 3.546 4 O -0.525 6.525 5 C 0.130 3.870 6 O -0.515 6.515 7 C 0.013 3.987 8 N -0.476 5.476 9 C 0.173 3.827 10 C -0.532 4.532 11 H 0.065 0.935 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.974 3.026 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.022 3.978 19 H 0.062 0.938 20 H 0.141 0.859 21 H 0.060 0.940 22 H 0.405 0.595 23 H 0.064 0.936 24 H 0.114 0.886 25 H 0.009 0.991 26 H -0.024 1.024 27 H 0.266 0.734 28 H 0.111 0.889 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 -13.752 -4.032 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.297 3.703 4 O -0.414 6.414 5 C 0.086 3.914 6 O -0.323 6.323 7 C -0.117 4.117 8 N -0.199 5.199 9 C 0.046 3.954 10 C -0.570 4.570 11 H 0.084 0.916 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.798 3.202 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.189 1.189 18 C -0.107 4.107 19 H 0.081 0.919 20 H 0.159 0.841 21 H 0.079 0.921 22 H 0.257 0.743 23 H 0.082 0.918 24 H 0.132 0.868 25 H 0.027 0.973 26 H -0.006 1.006 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.295 -13.053 -4.445 16.092 hybrid contribution -0.925 0.633 1.172 1.622 sum -9.220 -12.420 -3.273 15.811 Atomic orbital electron populations 1.23654 0.74266 1.06240 1.02564 1.86460 1.25490 1.31669 1.83150 1.24533 0.92220 0.82027 0.71560 1.90678 1.67004 1.37591 1.46105 1.22489 0.82286 0.89909 0.96719 1.86559 1.65048 1.15496 1.65195 1.24416 0.94601 0.98646 0.94000 1.68656 1.32737 1.13294 1.05182 1.19946 0.94580 0.86473 0.94424 1.21360 1.34486 0.94418 1.06781 0.91632 1.25973 0.97027 0.94626 1.01994 1.70085 1.47186 0.99382 1.40652 0.85368 0.79089 0.77398 0.78371 1.19188 1.20794 1.18931 1.24112 0.94557 0.92652 0.99354 0.91869 0.84060 0.92135 0.74277 0.91771 0.86809 0.97337 1.00593 0.92506 0.87087 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 15 2 O -0.35 -8.17 9.95 -46.82 -0.47 -8.63 15 3 C 0.45 13.92 7.28 71.24 0.52 14.44 15 4 O -0.52 -19.33 15.79 21.96 0.35 -18.98 15 5 C 0.13 4.22 1.86 -10.89 -0.02 4.20 15 6 O -0.51 -14.09 13.44 -137.38 -1.85 -15.93 15 7 C 0.01 0.48 6.87 86.37 0.59 1.07 15 8 N -0.48 -21.47 6.25 -914.74 -5.72 -27.19 15 9 C 0.17 9.49 4.58 85.56 0.39 9.88 15 10 C -0.53 -30.62 8.84 25.60 0.23 -30.39 15 11 H 0.07 3.65 7.80 -2.91 -0.02 3.63 15 12 C 0.00 0.13 5.46 84.65 0.46 0.60 15 13 N -0.93 -56.89 13.29 21.45 0.28 -56.60 15 14 Si 0.97 44.31 29.54 68.60 2.03 46.34 15 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 17 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 18 C 0.02 0.85 7.27 86.41 0.63 1.47 15 19 H 0.06 1.08 8.13 -2.39 -0.02 1.06 15 20 H 0.14 1.22 8.14 -2.38 -0.02 1.20 15 21 H 0.06 1.07 8.13 -2.39 -0.02 1.05 15 22 H 0.41 7.14 8.59 -74.06 -0.64 6.51 15 23 H 0.06 2.65 7.74 -2.39 -0.02 2.64 15 24 H 0.11 3.87 8.14 -2.39 -0.02 3.85 15 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 15 26 H -0.02 -1.40 7.70 -2.39 -0.02 -1.41 15 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 28 H 0.11 3.88 8.14 -2.39 -0.02 3.86 15 29 H 0.08 3.23 7.03 -2.39 -0.02 3.22 15 Total: -1.00 -70.34 258.29 -0.85 -71.20 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.52 Total: 6.91 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 4.00 Total: 2.90 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -5.43 Total: -83.79 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.97 Total: -43.55 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.34 -0.85 -71.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714465691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.120 kcal (2) G-P(sol) polarization free energy of solvation -70.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds