Wall clock time and date at job start Mon Mar 30 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00107 * 2 1 4 4 O 1.20825 * 119.99532 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00289 * 180.02562 * 3 2 1 6 6 O 1.42906 * 110.27387 * 35.63440 * 5 3 2 7 7 C 1.34920 * 116.99755 * 299.36735 * 6 5 3 8 8 H 1.07998 * 120.00745 * 359.97438 * 7 6 5 9 9 C 1.38642 * 119.99778 * 179.97438 * 7 6 5 10 10 N 1.31576 * 119.99863 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99986 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46831 * 90.00164 * 11 9 7 13 13 H 1.48508 * 109.46910 * 210.00038 * 11 9 7 14 14 H 1.48497 * 109.47114 * 329.99887 * 11 9 7 15 15 C 1.54593 * 110.39572 * 157.78016 * 5 3 2 16 16 C 1.54943 * 102.91873 * 140.91547 * 15 5 3 17 17 N 1.48529 * 103.23110 * 322.58517 * 16 15 5 18 18 C 1.47906 * 105.81645 * 39.20833 * 17 16 15 19 19 H 1.09001 * 109.47080 * 59.99916 * 1 2 3 20 20 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47032 * 300.00180 * 1 2 3 22 22 H 0.97000 * 120.00567 * 179.97438 * 10 9 7 23 23 H 1.08999 * 110.72465 * 259.27602 * 15 5 3 24 24 H 1.08997 * 110.72026 * 22.56217 * 15 5 3 25 25 H 1.08995 * 110.66363 * 81.02624 * 16 15 5 26 26 H 1.09004 * 110.66081 * 203.98526 * 16 15 5 27 27 H 1.00899 * 111.00512 * 278.69987 * 17 16 15 28 28 H 1.08998 * 109.91583 * 215.31824 * 18 17 16 29 29 H 1.09004 * 109.91554 * 94.02407 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 8 4.1175 0.2130 -0.7820 7 6 3.8425 -1.0466 -0.3844 8 1 3.2307 -1.2157 0.4894 9 6 4.3452 -2.1240 -1.0976 10 7 5.0910 -1.9180 -2.1618 11 14 3.9650 -3.8679 -0.5467 12 1 2.7174 -4.3336 -1.2038 13 1 5.0880 -4.7627 -0.9259 14 1 3.7876 -3.8938 0.9274 15 6 4.0339 2.6428 -0.5485 16 6 5.2372 2.9886 0.3643 17 7 4.8085 2.4893 1.6958 18 6 4.1053 1.2134 1.4407 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 5.4431 -2.6717 -2.6607 23 1 4.3508 2.5542 -1.5876 24 1 3.2457 3.3888 -0.4466 25 1 6.1354 2.4695 0.0297 26 1 5.4037 4.0655 0.3897 27 1 4.2000 3.1525 2.1519 28 1 3.2786 1.0984 2.1416 29 1 4.8003 0.3797 1.5420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724724605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:35 Heat of formation + Delta-G solvation = -107.364037 kcal Electronic energy + Delta-G solvation = -15366.880809 eV Core-core repulsion = 12677.215900 eV Total energy + Delta-G solvation = -2689.664909 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.23453 -37.99073 -35.95744 -35.17180 -31.77046 -29.15626 -28.50738 -26.93550 -24.55458 -22.42377 -21.44851 -19.37411 -18.04374 -16.98663 -16.25423 -15.86193 -15.46298 -14.98736 -14.25650 -13.53003 -13.42568 -13.01162 -12.67969 -12.47640 -11.95286 -11.60752 -11.54279 -11.17165 -11.09570 -10.92338 -10.80016 -10.37038 -10.19856 -10.11979 -9.62352 -9.18125 -8.41505 -8.02912 -6.04365 -3.66623 2.75872 3.24021 3.31703 3.35748 3.40227 4.23703 4.58470 5.00216 5.27593 5.31664 5.38849 5.50105 5.51266 5.57476 5.73726 5.80921 5.92091 6.07997 6.15536 6.40147 6.54050 6.69395 6.97309 7.02016 7.52206 7.64700 8.34429 8.36809 9.39465 9.92719 11.15177 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.013315 C = 0.010335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.460968 B = 2102.308982 C = 2708.572180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.319 6.319 3 C 0.450 3.550 4 O -0.537 6.537 5 C 0.105 3.895 6 O -0.254 6.254 7 C -0.354 4.354 8 H 0.080 0.920 9 C 0.028 3.972 10 N -0.885 5.885 11 Si 0.928 3.072 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.273 1.273 15 C -0.140 4.140 16 C 0.048 3.952 17 N -0.669 5.669 18 C 0.033 3.967 19 H 0.055 0.945 20 H 0.094 0.906 21 H 0.052 0.948 22 H 0.260 0.740 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.330 0.670 28 H 0.058 0.942 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 5.034 5.244 8.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.233 6.233 3 C 0.294 3.706 4 O -0.428 6.428 5 C 0.059 3.941 6 O -0.167 6.167 7 C -0.432 4.432 8 H 0.097 0.903 9 C -0.171 4.171 10 N -0.526 5.526 11 Si 0.754 3.246 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.179 4.179 16 C -0.081 4.081 17 N -0.296 5.296 18 C -0.098 4.098 19 H 0.073 0.927 20 H 0.113 0.887 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.145 0.855 28 H 0.076 0.924 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.664 4.934 5.177 8.036 hybrid contribution -1.636 -0.644 -0.112 1.762 sum -5.300 4.290 5.064 8.494 Atomic orbital electron populations 1.23216 0.79616 1.02932 1.01326 1.87079 1.20964 1.32653 1.82620 1.25693 0.93323 0.81214 0.70335 1.90521 1.67541 1.36937 1.47756 1.22603 0.84165 0.92690 0.94595 1.85864 1.69240 1.12308 1.49334 1.20926 1.30005 0.80096 1.12145 0.90285 1.24967 0.97544 0.98362 0.96210 1.70024 1.34445 1.30690 1.17461 0.85925 0.77757 0.82303 0.78569 1.20676 1.20956 1.19773 1.23056 0.99171 0.93419 1.02227 1.23081 0.97983 0.99577 0.87438 1.62810 1.40740 1.05515 1.20494 1.23395 0.98042 0.94591 0.93739 0.92660 0.88749 0.92935 0.93031 0.89089 0.89469 0.89289 0.90736 0.85516 0.92363 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.56 101.05 1.07 1.45 15 2 O -0.32 -6.94 7.74 -44.13 -0.34 -7.28 15 3 C 0.45 9.92 6.66 36.00 0.24 10.16 15 4 O -0.54 -11.78 15.32 -18.75 -0.29 -12.07 15 5 C 0.10 2.30 1.02 -90.42 -0.09 2.21 15 6 O -0.25 -6.90 9.42 -29.06 -0.27 -7.17 15 7 C -0.35 -9.76 7.36 30.88 0.23 -9.53 15 8 H 0.08 2.08 6.37 -52.49 -0.33 1.75 15 9 C 0.03 0.80 5.49 -17.51 -0.10 0.71 15 10 N -0.88 -26.71 13.67 55.48 0.76 -25.95 15 11 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 15 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 15 C -0.14 -2.62 6.29 -24.87 -0.16 -2.77 15 16 C 0.05 0.78 7.55 -1.90 -0.01 0.77 15 17 N -0.67 -11.15 7.51 -110.08 -0.83 -11.98 15 18 C 0.03 0.63 6.46 -2.75 -0.02 0.62 15 19 H 0.05 0.89 8.13 -51.93 -0.42 0.46 15 20 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 21 H 0.05 0.78 8.13 -51.93 -0.42 0.36 15 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 23 H 0.09 1.76 8.08 -51.93 -0.42 1.34 15 24 H 0.09 1.56 6.82 -51.93 -0.35 1.21 15 25 H 0.09 1.55 8.14 -51.93 -0.42 1.12 15 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 27 H 0.33 4.79 8.92 -39.29 -0.35 4.44 15 28 H 0.06 1.05 7.67 -51.93 -0.40 0.66 15 29 H 0.11 2.36 7.36 -51.93 -0.38 1.97 15 LS Contribution 250.14 15.07 3.77 3.77 Total: -1.00 -32.06 250.14 -4.55 -36.61 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.49 Total: 3.96 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 1.16 Total: 3.62 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.07 Total: -37.93 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.90 Total: -26.52 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.06 -4.55 -36.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724724605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.752 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds