Wall clock time and date at job start Mon Mar 30 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00107 * 2 1 4 4 O 1.20825 * 119.99532 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00289 * 180.02562 * 3 2 1 6 6 O 1.42906 * 110.27387 * 35.63440 * 5 3 2 7 7 C 1.34920 * 116.99755 * 299.36735 * 6 5 3 8 8 H 1.07998 * 120.00745 * 359.97438 * 7 6 5 9 9 C 1.38642 * 119.99778 * 179.97438 * 7 6 5 10 10 N 1.31576 * 119.99863 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99986 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46831 * 90.00164 * 11 9 7 13 13 H 1.48508 * 109.46910 * 210.00038 * 11 9 7 14 14 H 1.48497 * 109.47114 * 329.99887 * 11 9 7 15 15 C 1.54593 * 110.39572 * 157.78016 * 5 3 2 16 16 C 1.54943 * 102.91873 * 140.91547 * 15 5 3 17 17 N 1.48529 * 103.23110 * 322.58517 * 16 15 5 18 18 C 1.47906 * 105.81645 * 39.20833 * 17 16 15 19 19 H 1.09001 * 109.47080 * 59.99916 * 1 2 3 20 20 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47032 * 300.00180 * 1 2 3 22 22 H 0.97000 * 120.00567 * 179.97438 * 10 9 7 23 23 H 1.08999 * 110.72465 * 259.27602 * 15 5 3 24 24 H 1.08997 * 110.72026 * 22.56217 * 15 5 3 25 25 H 1.08995 * 110.66363 * 81.02624 * 16 15 5 26 26 H 1.09004 * 110.66081 * 203.98526 * 16 15 5 27 27 H 1.00899 * 111.00512 * 278.69987 * 17 16 15 28 28 H 1.08998 * 109.91583 * 215.31824 * 18 17 16 29 29 H 1.09004 * 109.91554 * 94.02407 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 8 4.1175 0.2130 -0.7820 7 6 3.8425 -1.0466 -0.3844 8 1 3.2307 -1.2157 0.4894 9 6 4.3452 -2.1240 -1.0976 10 7 5.0910 -1.9180 -2.1618 11 14 3.9650 -3.8679 -0.5467 12 1 2.7174 -4.3336 -1.2038 13 1 5.0880 -4.7627 -0.9259 14 1 3.7876 -3.8938 0.9274 15 6 4.0339 2.6428 -0.5485 16 6 5.2372 2.9886 0.3643 17 7 4.8085 2.4893 1.6958 18 6 4.1053 1.2134 1.4407 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 5.4431 -2.6717 -2.6607 23 1 4.3508 2.5542 -1.5876 24 1 3.2457 3.3888 -0.4466 25 1 6.1354 2.4695 0.0297 26 1 5.4037 4.0655 0.3897 27 1 4.2000 3.1525 2.1519 28 1 3.2786 1.0984 2.1416 29 1 4.8003 0.3797 1.5420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724724605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:35 Heat of formation + Delta-G solvation = -131.685798 kcal Electronic energy + Delta-G solvation = -15367.935480 eV Core-core repulsion = 12677.215900 eV Total energy + Delta-G solvation = -2690.719580 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.90903 -39.61252 -37.70966 -36.89177 -33.81567 -30.72357 -30.05489 -28.35746 -26.63062 -24.02331 -22.89427 -21.07432 -19.91371 -18.75824 -17.84261 -17.52141 -17.22840 -16.52894 -16.04983 -15.14820 -14.99225 -14.74455 -14.23028 -14.14726 -13.61286 -13.31665 -13.03627 -12.85553 -12.72794 -12.61195 -12.34416 -12.10030 -11.80789 -11.75039 -11.39489 -11.09247 -10.27509 -9.67707 -8.14186 -5.81054 1.04195 1.43498 1.47678 1.58190 1.80687 2.35439 3.13425 3.27945 3.39882 3.68125 3.85527 3.98931 4.24030 4.25583 4.28616 4.35802 4.48665 4.62464 4.81032 4.86681 5.05659 5.13979 5.31910 5.42232 5.56377 6.25348 6.41026 6.68884 7.30582 7.92717 9.09090 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.013315 C = 0.010335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.460968 B = 2102.308982 C = 2708.572180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.344 6.344 3 C 0.450 3.550 4 O -0.539 6.539 5 C 0.088 3.912 6 O -0.293 6.293 7 C -0.348 4.348 8 H 0.086 0.914 9 C -0.038 4.038 10 N -0.938 5.938 11 Si 0.997 3.003 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.256 1.256 15 C -0.137 4.137 16 C 0.056 3.944 17 N -0.662 5.662 18 C 0.042 3.958 19 H 0.056 0.944 20 H 0.122 0.878 21 H 0.069 0.931 22 H 0.259 0.741 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.348 0.652 28 H 0.071 0.929 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 5.360 6.652 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.294 3.706 4 O -0.431 6.431 5 C 0.043 3.957 6 O -0.207 6.207 7 C -0.427 4.427 8 H 0.104 0.896 9 C -0.231 4.231 10 N -0.583 5.583 11 Si 0.820 3.180 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.180 1.180 15 C -0.175 4.175 16 C -0.073 4.073 17 N -0.290 5.290 18 C -0.088 4.088 19 H 0.075 0.925 20 H 0.141 0.859 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.095 0.905 24 H 0.117 0.883 25 H 0.091 0.909 26 H 0.135 0.865 27 H 0.165 0.835 28 H 0.090 0.910 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.698 5.291 6.618 9.688 hybrid contribution -1.429 -0.614 -0.510 1.637 sum -6.127 4.676 6.108 9.834 Atomic orbital electron populations 1.23565 0.76559 1.05217 1.02264 1.86970 1.23949 1.32486 1.82423 1.25418 0.93357 0.81367 0.70421 1.90506 1.67619 1.36870 1.48080 1.23051 0.84260 0.92550 0.95798 1.85810 1.70549 1.13107 1.51275 1.21247 1.29105 0.80606 1.11697 0.89613 1.26084 0.97686 1.02850 0.96461 1.70187 1.36771 1.31893 1.19446 0.84869 0.77590 0.76613 0.78954 1.19907 1.20850 1.18024 1.23117 1.00493 0.91995 1.01940 1.23102 0.96070 1.01886 0.86252 1.62711 1.40641 1.04947 1.20703 1.23170 0.97829 0.95323 0.92517 0.92541 0.85938 0.91185 0.93224 0.90465 0.88282 0.90923 0.86516 0.83536 0.91021 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.56 113.37 1.20 1.72 15 2 O -0.34 -14.56 7.74 -46.81 -0.36 -14.92 15 3 C 0.45 19.40 6.66 71.23 0.47 19.88 15 4 O -0.54 -22.79 15.32 21.97 0.34 -22.45 15 5 C 0.09 3.82 1.02 -10.66 -0.01 3.81 15 6 O -0.29 -16.23 9.42 -69.86 -0.66 -16.89 15 7 C -0.35 -19.41 7.36 67.92 0.50 -18.91 15 8 H 0.09 4.51 6.37 -2.91 -0.02 4.49 15 9 C -0.04 -2.14 5.49 84.83 0.47 -1.68 15 10 N -0.94 -58.20 13.67 21.61 0.30 -57.91 15 11 Si 1.00 44.18 29.55 68.60 2.03 46.20 15 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 13 H -0.28 -12.35 7.11 99.48 0.71 -11.65 15 14 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 15 C -0.14 -4.99 6.29 31.80 0.20 -4.79 15 16 C 0.06 1.70 7.55 86.65 0.65 2.36 15 17 N -0.66 -20.64 7.51 -502.18 -3.77 -24.41 15 18 C 0.04 1.61 6.46 86.45 0.56 2.17 15 19 H 0.06 1.71 8.13 -2.39 -0.02 1.69 15 20 H 0.12 3.03 8.14 -2.39 -0.02 3.01 15 21 H 0.07 1.90 8.13 -2.39 -0.02 1.88 15 22 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 23 H 0.08 3.01 8.08 -2.39 -0.02 2.99 15 24 H 0.10 3.36 6.82 -2.39 -0.02 3.34 15 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.12 2.60 8.14 -2.39 -0.02 2.58 15 27 H 0.35 8.98 8.92 -89.69 -0.80 8.18 15 28 H 0.07 2.49 7.67 -2.39 -0.02 2.47 15 29 H 0.08 3.65 7.36 -2.38 -0.02 3.63 15 Total: -1.00 -69.46 250.14 2.27 -67.19 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.36 Total: 18.62 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 4.04 Total: 4.57 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.48 Total: -82.32 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.68 Total: -54.26 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -69.46 2.27 -67.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724724605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.495 kcal (2) G-P(sol) polarization free energy of solvation -69.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds