Wall clock time and date at job start Mon Mar 30 2020 02:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 116.99996 * 2 1 4 4 O 1.20822 * 120.00575 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99725 * 180.02562 * 3 2 1 6 6 O 1.42903 * 110.64795 * 325.69836 * 5 3 2 7 7 C 1.34924 * 116.99456 * 56.84724 * 6 5 3 8 8 H 1.07999 * 120.00312 * 0.02562 * 7 6 5 9 9 C 1.38635 * 119.99732 * 180.02562 * 7 6 5 10 10 N 1.31588 * 120.00081 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00025 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00234 * 11 9 7 13 13 H 1.48494 * 109.46800 * 30.00282 * 11 9 7 14 14 H 1.48504 * 109.46913 * 149.99984 * 11 9 7 15 15 C 1.54598 * 110.72311 * 202.54817 * 5 3 2 16 16 C 1.53998 * 105.14166 * 219.50407 * 15 5 3 17 17 N 1.47907 * 107.05505 * 358.77930 * 16 15 5 18 18 C 1.48531 * 105.82370 * 25.32593 * 17 16 15 19 19 H 1.08996 * 109.47718 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47400 * 300.00308 * 1 2 3 21 21 H 1.09000 * 109.47180 * 59.99980 * 1 2 3 22 22 H 0.97001 * 119.99805 * 179.97438 * 10 9 7 23 23 H 1.09002 * 110.30930 * 338.42542 * 15 5 3 24 24 H 1.08997 * 110.31145 * 100.59075 * 15 5 3 25 25 H 1.09005 * 109.91462 * 118.12391 * 16 15 5 26 26 H 1.08997 * 109.91790 * 239.42220 * 16 15 5 27 27 H 1.00893 * 110.99705 * 145.84227 * 17 16 15 28 28 H 1.08992 * 110.66815 * 202.36270 * 18 17 16 29 29 H 1.08998 * 110.66389 * 79.22706 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1276 0.1978 0.7526 7 6 3.7931 -1.0535 0.3746 8 1 3.1292 -1.2052 -0.4636 9 6 4.3017 -2.1445 1.0623 10 7 3.9760 -3.3649 0.6934 11 14 5.4507 -1.8823 2.5116 12 1 6.8549 -1.8457 2.0299 13 1 5.1220 -0.5962 3.1773 14 1 5.2883 -2.9965 3.4799 15 6 4.0430 2.6368 0.5540 16 6 5.2385 3.0353 -0.3311 17 7 5.4394 1.9420 -1.3068 18 6 4.1185 1.2776 -1.4482 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 4.3322 -4.1283 1.1743 23 1 3.2479 3.3779 0.4720 24 1 4.3589 2.5331 1.5920 25 1 5.0185 3.9652 -0.8556 26 1 6.1315 3.1542 0.2825 27 1 5.7595 2.3026 -2.1930 28 1 4.2379 0.2588 -1.8164 29 1 3.4676 1.8522 -2.1071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724724606.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:37 Heat of formation + Delta-G solvation = -126.321701 kcal Electronic energy + Delta-G solvation = -15388.934078 eV Core-core repulsion = 12698.447103 eV Total energy + Delta-G solvation = -2690.486975 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.88317 -39.61600 -37.74752 -36.91156 -33.96705 -31.17703 -30.06349 -28.41591 -26.49613 -24.05550 -22.59533 -20.98702 -19.84772 -19.09105 -18.04212 -17.56647 -17.17104 -16.25983 -15.88544 -15.31061 -15.00074 -14.68594 -14.43082 -14.08910 -13.88742 -13.53057 -13.22759 -12.99489 -12.62510 -12.56161 -12.32603 -12.18224 -11.79868 -11.73679 -11.28018 -11.24163 -10.33409 -9.44379 -8.15952 -5.83894 1.01150 1.41999 1.44650 1.61827 1.79441 2.49777 3.14843 3.20873 3.29669 3.54153 3.65794 3.95544 4.17878 4.24768 4.30015 4.37396 4.44147 4.64561 4.75877 4.80005 4.96989 5.11426 5.35519 5.68915 5.83143 6.20713 6.48554 6.69621 7.23052 7.77205 8.98333 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.024148 B = 0.015268 C = 0.010998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.249892 B = 1833.456289 C = 2545.221930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.450 3.550 4 O -0.534 6.534 5 C 0.122 3.878 6 O -0.303 6.303 7 C -0.330 4.330 8 H 0.078 0.922 9 C -0.008 4.008 10 N -0.947 5.947 11 Si 0.959 3.041 12 H -0.276 1.276 13 H -0.267 1.267 14 H -0.285 1.285 15 C -0.115 4.115 16 C 0.050 3.950 17 N -0.670 5.670 18 C 0.037 3.963 19 H 0.114 0.886 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.270 0.730 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.354 0.646 28 H 0.079 0.921 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 11.348 -2.479 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.294 3.706 4 O -0.426 6.426 5 C 0.078 3.922 6 O -0.218 6.218 7 C -0.408 4.408 8 H 0.095 0.905 9 C -0.201 4.201 10 N -0.594 5.594 11 Si 0.785 3.215 12 H -0.202 1.202 13 H -0.191 1.191 14 H -0.211 1.211 15 C -0.153 4.153 16 C -0.079 4.079 17 N -0.301 5.301 18 C -0.093 4.093 19 H 0.132 0.868 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.121 0.879 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.172 0.828 28 H 0.097 0.903 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.002 11.024 -1.822 11.219 hybrid contribution -0.696 0.194 -0.132 0.735 sum -1.698 11.219 -1.954 11.514 Atomic orbital electron populations 1.23531 0.76698 1.04854 1.02397 1.87104 1.23902 1.32246 1.82137 1.25177 0.93194 0.81441 0.70757 1.90517 1.67517 1.36736 1.47820 1.22412 0.83667 0.91222 0.94858 1.85377 1.68780 1.12981 1.54707 1.20415 1.25281 0.80261 1.14826 0.90468 1.24959 1.00218 0.93734 1.01212 1.69776 1.48126 0.97958 1.43519 0.85356 0.79285 0.77432 0.79423 1.20155 1.19121 1.21111 1.22581 0.99512 0.91561 1.01636 1.22686 0.97547 0.93201 0.94440 1.62887 1.24879 1.27800 1.14531 1.23300 0.91216 1.00887 0.93906 0.86797 0.91936 0.91219 0.92053 0.87933 0.89733 0.90756 0.89079 0.82798 0.90291 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 10.56 113.37 1.20 1.80 15 2 O -0.34 -15.02 7.46 -46.72 -0.35 -15.36 15 3 C 0.45 19.14 6.92 71.24 0.49 19.63 15 4 O -0.53 -21.98 15.34 21.98 0.34 -21.64 15 5 C 0.12 5.06 0.98 -10.33 -0.01 5.05 15 6 O -0.30 -15.54 8.32 -69.93 -0.58 -16.12 15 7 C -0.33 -18.79 7.96 67.91 0.54 -18.25 15 8 H 0.08 4.65 6.26 -2.91 -0.02 4.63 15 9 C -0.01 -0.47 5.49 84.82 0.47 0.00 15 10 N -0.95 -58.14 13.97 21.61 0.30 -57.83 15 11 Si 0.96 47.54 28.62 68.60 1.96 49.50 15 12 H -0.28 -13.36 7.11 99.48 0.71 -12.66 15 13 H -0.27 -13.06 7.11 99.48 0.71 -12.35 15 14 H -0.29 -13.63 7.11 99.48 0.71 -12.92 15 15 C -0.12 -3.81 6.21 31.48 0.20 -3.61 15 16 C 0.05 1.34 7.52 86.45 0.65 1.99 15 17 N -0.67 -20.94 7.51 -502.19 -3.77 -24.71 15 18 C 0.04 1.35 6.55 86.65 0.57 1.91 15 19 H 0.11 3.29 8.14 -2.39 -0.02 3.27 15 20 H 0.06 1.93 8.13 -2.39 -0.02 1.91 15 21 H 0.07 2.02 8.13 -2.39 -0.02 2.00 15 22 H 0.27 15.61 8.31 -92.71 -0.77 14.84 15 23 H 0.10 3.15 6.81 -2.39 -0.02 3.14 15 24 H 0.08 2.84 8.08 -2.39 -0.02 2.82 15 25 H 0.07 1.51 8.14 -2.38 -0.02 1.49 15 26 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 27 H 0.35 8.51 8.92 -89.70 -0.80 7.71 15 28 H 0.08 3.32 7.22 -2.39 -0.02 3.30 15 29 H 0.06 1.91 8.05 -2.39 -0.02 1.89 15 Total: -1.00 -68.68 249.06 2.36 -66.32 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.36 Total: 11.34 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 4.10 Total: 8.52 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -3.47 Total: -82.55 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.59 Total: -53.13 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.96 Total: 49.50 kcal Total: -68.68 2.36 -66.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724724606.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.004 kcal (2) G-P(sol) polarization free energy of solvation -68.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds