Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37092 * 119.99958 * 2 1 4 4 H 1.08003 * 120.00261 * 145.59088 * 3 2 1 5 5 C 1.38947 * 120.00252 * 325.58352 * 3 2 1 6 6 N 1.31424 * 119.99679 * 354.62564 * 5 3 2 7 7 Si 1.86797 * 120.00589 * 174.62322 * 5 3 2 8 8 H 1.48500 * 109.46910 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47284 * 119.99850 * 7 5 3 10 10 H 1.48494 * 109.47443 * 240.00398 * 7 5 3 11 11 C 1.34776 * 119.99562 * 179.72013 * 2 1 3 12 12 O 1.21293 * 119.99691 * 184.85091 * 11 2 1 13 13 C 1.50693 * 120.00441 * 4.84850 * 11 2 1 14 14 O 1.42898 * 110.80596 * 305.34641 * 13 11 2 15 15 C 1.54810 * 110.90619 * 68.97690 * 13 11 2 16 16 C 1.54166 * 104.15989 * 139.06025 * 15 13 11 17 17 O 1.43740 * 107.29821 * 2.06966 * 16 15 13 18 18 C 1.44383 * 106.97620 * 333.46063 * 17 16 15 19 19 H 1.09000 * 109.47075 * 95.75888 * 1 2 3 20 20 H 1.08998 * 109.47349 * 215.75872 * 1 2 3 21 21 H 1.08996 * 109.47161 * 335.76260 * 1 2 3 22 22 H 0.96998 * 119.99652 * 179.97438 * 6 5 3 23 23 H 0.96698 * 114.00642 * 305.62101 * 14 13 11 24 24 H 1.09003 * 110.48827 * 257.75351 * 15 13 11 25 25 H 1.09000 * 110.48827 * 20.40171 * 15 13 11 26 26 H 1.09003 * 109.89494 * 242.63544 * 16 15 13 27 27 H 1.08991 * 109.97965 * 121.55558 * 16 15 13 28 28 H 1.08998 * 110.62186 * 281.55938 * 18 17 16 29 29 H 1.09002 * 110.61948 * 158.55610 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0888 1.2691 0.5285 5 6 1.6382 2.2853 -0.6801 6 7 0.5526 2.1582 -1.4099 7 14 2.4923 3.9420 -0.5571 8 1 3.6847 3.8203 0.3195 9 1 2.9165 4.3820 -1.9106 10 1 1.5552 4.9407 0.0170 11 6 2.1388 -1.1672 0.0057 12 8 3.3485 -1.1687 0.0945 13 6 1.3894 -2.4705 -0.0982 14 8 0.3892 -2.5632 0.9181 15 6 0.7650 -2.6380 -1.5049 16 6 1.0018 -4.1221 -1.8483 17 8 1.6477 -4.7254 -0.7147 18 6 2.3623 -3.6751 -0.0284 19 1 -0.3633 -0.1031 -1.0225 20 1 -0.3634 -0.8339 0.6005 21 1 -0.3633 0.9370 0.4219 22 1 0.1948 2.9249 -1.8844 23 1 0.7266 -2.4343 1.8151 24 1 -0.3022 -2.4179 -1.4773 25 1 1.2697 -1.9944 -2.2254 26 1 1.6431 -4.2020 -2.7261 27 1 0.0495 -4.6168 -2.0390 28 1 3.2950 -3.4455 -0.5434 29 1 2.5534 -3.9545 1.0077 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583981936.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = -140.004238 kcal Electronic energy + Delta-G solvation = -15364.335207 eV Core-core repulsion = 12673.254912 eV Total energy + Delta-G solvation = -2691.080295 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.55179 -39.37669 -37.05540 -36.67546 -33.64681 -32.29476 -29.85483 -28.22922 -26.71374 -24.11749 -23.11723 -20.99453 -19.16759 -18.62432 -17.53316 -17.18236 -17.05010 -16.21860 -16.01972 -15.62720 -15.37449 -14.76124 -14.35868 -13.71757 -13.59137 -13.27977 -13.12505 -12.86780 -12.76587 -12.55475 -12.45472 -12.30747 -12.12740 -11.40778 -11.01842 -10.71105 -10.11989 -9.60406 -8.37109 -6.14176 1.33206 1.39305 1.52833 1.79354 2.22823 2.72215 2.89220 2.99962 3.10745 3.59613 3.75932 3.91428 4.14555 4.22220 4.57257 4.65418 4.78951 4.82255 4.92009 4.97803 5.06011 5.35582 5.39919 5.72713 6.07777 6.35623 6.58523 7.08155 7.36575 7.90679 8.64862 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.052977 B = 0.009316 C = 0.008919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.402890 B = 3004.765500 C = 3138.731410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.442 5.442 3 C -0.352 4.352 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.894 5.894 7 Si 0.991 3.009 8 H -0.272 1.272 9 H -0.275 1.275 10 H -0.265 1.265 11 C 0.423 3.577 12 O -0.622 6.622 13 C 0.103 3.897 14 O -0.533 6.533 15 C -0.136 4.136 16 C 0.052 3.948 17 O -0.383 6.383 18 C 0.048 3.952 19 H 0.039 0.961 20 H 0.090 0.910 21 H 0.046 0.954 22 H 0.274 0.726 23 H 0.393 0.607 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -6.910 0.770 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.160 5.160 3 C -0.480 4.480 4 H 0.088 0.912 5 C -0.201 4.201 6 N -0.531 5.531 7 Si 0.814 3.186 8 H -0.196 1.196 9 H -0.201 1.201 10 H -0.190 1.190 11 C 0.211 3.789 12 O -0.509 6.509 13 C 0.058 3.942 14 O -0.341 6.341 15 C -0.174 4.174 16 C -0.024 4.024 17 O -0.302 6.302 18 C -0.029 4.029 19 H 0.058 0.942 20 H 0.108 0.892 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.243 0.757 24 H 0.120 0.880 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.278 -7.093 0.242 7.818 hybrid contribution 0.754 1.470 0.277 1.675 sum -2.524 -5.623 0.519 6.186 Atomic orbital electron populations 1.21781 0.79370 1.01428 1.00922 1.43727 1.06711 1.04258 1.61272 1.19645 1.06974 0.88614 1.32745 0.91203 1.26232 0.96914 1.03240 0.93680 1.70021 1.21825 1.32535 1.28721 0.84915 0.78345 0.77069 0.78249 1.19629 1.20066 1.18992 1.21252 0.87776 0.86587 0.83309 1.90498 1.15895 1.87808 1.56713 1.22626 0.88818 0.91474 0.91246 1.86441 1.34889 1.94087 1.18677 1.22940 1.03502 0.98315 0.92642 1.23319 0.99147 0.90851 0.89106 1.88813 1.67483 1.32017 1.41842 1.23862 0.94148 0.85404 0.99505 0.94219 0.89237 0.93534 0.91611 0.75704 0.87995 0.91041 0.91049 0.86981 0.91533 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.81 7.73 127.77 0.99 5.80 15 2 N -0.44 -22.63 2.98 -658.91 -1.96 -24.59 15 3 C -0.35 -19.86 9.05 84.04 0.76 -19.10 15 4 H 0.07 4.18 7.58 -2.91 -0.02 4.16 15 5 C 0.00 0.11 5.17 84.92 0.44 0.55 15 6 N -0.89 -47.40 11.13 21.66 0.24 -47.16 15 7 Si 0.99 42.18 29.56 68.60 2.03 44.21 15 8 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 9 H -0.28 -11.45 7.11 99.48 0.71 -10.75 15 10 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 11 C 0.42 20.38 6.56 87.65 0.57 20.96 15 12 O -0.62 -34.31 15.52 -3.07 -0.05 -34.35 15 13 C 0.10 3.79 0.84 -10.24 -0.01 3.79 15 14 O -0.53 -17.04 10.35 -148.98 -1.54 -18.58 15 15 C -0.14 -4.54 5.47 31.61 0.17 -4.37 15 16 C 0.05 1.44 7.70 72.38 0.56 2.00 15 17 O -0.38 -12.30 11.52 -148.98 -1.72 -14.02 15 18 C 0.05 1.64 6.56 72.67 0.48 2.12 15 19 H 0.04 1.82 7.45 -2.39 -0.02 1.80 15 20 H 0.09 3.42 5.05 -2.39 -0.01 3.41 15 21 H 0.05 2.20 7.21 -2.39 -0.02 2.19 15 22 H 0.27 13.57 8.31 -92.71 -0.77 12.80 15 23 H 0.39 10.19 9.04 -74.06 -0.67 9.52 15 24 H 0.10 3.19 7.85 -2.39 -0.02 3.17 15 25 H 0.07 2.66 7.85 -2.39 -0.02 2.65 15 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 27 H 0.11 2.50 8.14 -2.39 -0.02 2.48 15 28 H 0.07 2.49 7.40 -2.39 -0.02 2.48 15 29 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 Total: -1.00 -66.02 243.64 1.46 -64.57 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.50 Total: 18.19 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 3.96 Total: 11.74 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -1.72 Total: -71.74 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -3.31 Total: -66.95 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -66.02 1.46 -64.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583981936.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.439 kcal (2) G-P(sol) polarization free energy of solvation -66.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds