Wall clock time and date at job start Mon Mar 30 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39594 * 120.10481 * 33.93418 * 3 2 1 5 5 C 1.38000 * 120.00561 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.22332 * 359.97438 * 5 4 3 7 7 C 1.38986 * 120.21194 * 359.97438 * 6 5 4 8 8 N 1.39692 * 120.00692 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00050 * 0.02562 * 8 7 6 10 10 H 1.08999 * 109.47577 * 325.00130 * 9 8 7 11 11 C 1.53003 * 109.47078 * 84.99873 * 9 8 7 12 12 C 1.50703 * 109.47115 * 204.99837 * 9 8 7 13 13 H 1.08002 * 120.00187 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99451 * 180.02562 * 12 9 8 15 15 N 1.31506 * 120.00449 * 0.02562 * 14 12 9 16 16 Si 1.86809 * 119.99312 * 179.97438 * 14 12 9 17 17 H 1.48492 * 109.47145 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46842 * 119.99859 * 16 14 12 19 19 H 1.48499 * 109.47170 * 239.99680 * 16 14 12 20 20 C 1.38692 * 119.98599 * 0.02562 * 7 6 5 21 21 H 4.52045 * 14.03220 * 0.02562 * 4 2 1 22 22 H 1.07997 * 119.99872 * 0.03574 * 4 3 2 23 23 H 1.08003 * 119.89525 * 179.97438 * 5 4 3 24 24 H 1.08000 * 119.89691 * 179.72355 * 6 5 4 25 25 H 0.97005 * 119.99877 * 180.02562 * 8 7 6 26 26 H 1.09007 * 109.47031 * 179.97438 * 11 9 8 27 27 H 1.08999 * 109.47218 * 299.99830 * 11 9 8 28 28 H 1.08997 * 109.46964 * 60.00458 * 11 9 8 29 29 H 0.97007 * 120.00092 * 180.02562 * 15 14 12 30 30 H 1.08005 * 120.10740 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3066 -1.0010 -0.6742 5 6 4.6866 -0.9987 -0.6724 6 6 5.3800 -0.0064 -0.0049 7 6 4.6917 0.9959 0.6684 8 7 5.3966 1.9963 1.3419 9 6 6.8615 1.9894 1.3382 10 1 7.2201 0.9602 1.3564 11 6 7.3716 2.6848 0.0744 12 6 7.3704 2.7202 2.5539 13 1 6.6725 3.1468 3.2591 14 6 8.7272 2.8441 2.7659 15 7 9.5771 2.3252 1.9070 16 14 9.3580 3.7507 4.2725 17 1 8.2074 4.2371 5.0753 18 1 10.1812 2.8290 5.0962 19 1 10.1870 4.9058 3.8442 20 6 3.3048 1.0021 0.6723 21 1 -1.0500 -0.0004 -0.0009 22 1 2.7687 -1.7777 -1.1973 23 1 5.2269 -1.7748 -1.1942 24 1 6.4599 -0.0122 -0.0032 25 1 4.9161 2.6956 1.8121 26 1 8.4616 2.6800 0.0718 27 1 7.0035 2.1562 -0.8049 28 1 7.0131 3.7140 0.0563 29 1 10.5316 2.4121 2.0564 30 1 2.7679 1.7798 1.1952 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:21 Heat of formation + Delta-G solvation = 72.179350 kcal Electronic energy + Delta-G solvation = -13247.772284 eV Core-core repulsion = 11009.034975 eV Total energy + Delta-G solvation = -2238.737310 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.95930 -35.81814 -33.44689 -32.57509 -30.31538 -29.40247 -27.23000 -25.26464 -23.08447 -21.72774 -20.45607 -18.20005 -17.08484 -16.00455 -15.35391 -15.16555 -14.36617 -13.99398 -13.38113 -13.07585 -12.99253 -12.45870 -12.00278 -11.38676 -11.33830 -11.09866 -10.94956 -10.80071 -10.56533 -10.31656 -10.26573 -10.12767 -9.34742 -9.03909 -8.53748 -8.18597 -6.60027 -6.18938 -4.26997 1.41391 2.11070 2.91140 3.20487 3.28777 3.32105 3.39893 4.21657 4.40770 4.52195 4.64106 5.13960 5.39315 5.61736 5.73712 5.93932 6.02226 6.29241 6.47466 6.67787 6.82990 6.90974 6.94016 7.01369 7.05005 7.27012 7.46896 7.64375 7.69111 7.81919 8.03875 8.32224 8.66683 8.87627 9.40430 10.86967 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.051982 B = 0.006287 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.520622 B = 4452.543036 C = 4779.260436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.124 4.124 3 C 0.041 3.959 4 C -0.178 4.178 5 C -0.072 4.072 6 C -0.190 4.190 7 C 0.237 3.763 8 N -0.724 5.724 9 C 0.266 3.734 10 H 0.041 0.959 11 C -0.153 4.153 12 C -0.530 4.530 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.901 3.099 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.192 4.192 21 H 0.220 0.780 22 H 0.112 0.888 23 H 0.119 0.881 24 H 0.130 0.870 25 H 0.390 0.610 26 H 0.090 0.910 27 H 0.014 0.986 28 H 0.028 0.972 29 H 0.264 0.736 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.782 -3.579 -3.583 11.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.124 4.124 3 C 0.040 3.960 4 C -0.199 4.199 5 C -0.091 4.091 6 C -0.213 4.213 7 C 0.127 3.873 8 N -0.346 5.346 9 C 0.163 3.837 10 H 0.059 0.941 11 C -0.212 4.212 12 C -0.568 4.568 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.524 5.524 16 Si 0.729 3.271 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.215 4.215 21 H 0.237 0.763 22 H 0.130 0.870 23 H 0.137 0.863 24 H 0.147 0.853 25 H 0.223 0.777 26 H 0.108 0.892 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.296 -3.569 -3.590 10.585 hybrid contribution 0.055 0.791 0.966 1.250 sum -9.241 -2.777 -2.624 10.000 Atomic orbital electron populations 1.24730 0.95656 1.01085 1.01186 1.20341 0.92270 0.99869 0.99960 1.15607 0.85641 0.95932 0.98771 1.20675 0.94001 1.00112 1.05080 1.20738 0.93459 0.97382 0.97510 1.20954 1.00590 0.96487 1.03290 1.17883 0.90315 0.88921 0.90132 1.45606 1.08052 1.26662 1.54256 1.18751 0.73600 0.97134 0.94175 0.94126 1.22190 1.04306 0.98368 0.96316 1.21247 0.92001 1.36409 1.07185 0.92075 1.24871 0.96598 0.95390 0.96816 1.69880 1.02466 1.44648 1.35421 0.86390 0.78878 0.79416 0.82430 1.19754 1.20826 1.20844 1.20494 0.92241 1.01587 1.07215 0.76308 0.86955 0.86318 0.85256 0.77663 0.89164 0.96709 0.95239 0.92610 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.61 19.25 29.55 0.57 -2.04 16 2 C -0.12 -1.91 13.24 -38.84 -0.51 -2.43 16 3 C 0.04 0.70 5.72 -107.03 -0.61 0.08 16 4 C -0.18 -2.82 9.75 -39.16 -0.38 -3.20 16 5 C -0.07 -1.16 10.02 -39.67 -0.40 -1.56 16 6 C -0.19 -3.57 8.85 -39.31 -0.35 -3.91 16 7 C 0.24 4.61 6.63 -83.83 -0.56 4.05 16 8 N -0.72 -15.13 5.24 -53.32 -0.28 -15.41 16 9 C 0.27 6.40 2.25 -69.08 -0.16 6.25 16 10 H 0.04 1.06 6.47 -51.93 -0.34 0.73 16 11 C -0.15 -3.60 9.20 37.16 0.34 -3.26 16 12 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -24.11 11.32 55.43 0.63 -23.48 16 16 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.19 -3.41 9.60 -38.98 -0.37 -3.78 16 21 H 0.22 1.73 7.80 -54.09 -0.42 1.31 16 22 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 23 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 24 H 0.13 2.56 6.10 -52.49 -0.32 2.24 16 25 H 0.39 7.65 8.55 -40.82 -0.35 7.30 16 26 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 27 H 0.01 0.31 7.71 -51.93 -0.40 -0.09 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.12 1.91 8.06 -52.48 -0.42 1.48 16 LS Contribution 267.02 15.07 4.02 4.02 Total: -1.00 -27.47 267.02 -6.85 -34.32 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -3.37 Total: 7.40 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -2.82 Total: -22.31 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.35 Total: -38.89 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.47 -6.85 -34.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.495 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds